| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1660 |
|---|
| Symbol | |
|---|
| ID | 7272202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1708680 |
|---|
| End bp | 1711025 |
|---|
| Gene Length | 2346 bp |
|---|
| Protein Length | 781 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643570273 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002466695 |
|---|
| Protein GI | 219852263 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGG AGATGGAGAG GCTCAGGCAG GAGCTCGAAG ACCTGCGTTC CCGGAACCGG
GAACTCGAAG AGACGCTGGA TGCGATTCAG TCCGGCGAGG TGGACGCGAT CGTCGTCTCG
AAAGAGGGGC GTAAGGAGAT CTACACGCTG GAAGGGGCGG ACCACCTGTA CCGCGTCCTT
GTCGAGAAGA TCCAGGAGGG GGCCCTCACC CTGACGGTGA CCGGAATGAT CCTGTACGCC
AACACGGCCT TCGTCGCAAT GCGCCGGCAG CGTCTCTCTG CGATCATCGG CACCTCTCTC
CGCGATCATA TCGCACCCCG GGATCGGAGT CGCTTCGACG AACTGCTCAC CAGGTCCCTG
ACCGGCCCGG GCAGGGGCGA AATGCTCGTC TGCAGTGGCG CCGGGTCATT TCCCGTGCTG
GTCTCGATGA CCCCGATCAT GGTGGACGGG TCGCCGAAGC TGAGCGTCGT GATCAGCGAC
CGGAAGGAGG ACTACGACCG TCTGCATCTC CAGAGCCGCA TGCTCGACGC CGTCGCCGAC
GCAGTCATCG CAACCGATCC TGCCGGCCGG ATCATCTACT GGAACTGGTC GGCCACACGG
ACGTACGGCT GGAAAGAAGC CGAGGCGATG GGACAGAGCC TGAACGAGGC CGTTGTGCGC
GAACTGTCGC AGGACGACGC CGATCGTATG GCCGAGCAGC TCGGCTCCGG CAATGCCTGG
TCTGGCGAGT TCCAGGTTCA CCATCGCGAC GGCCATCTCT TTCCTATCCA TGTGAACCAG
GCACCGGTCT TCGACGAGGA TGGTGAGTTC GTCGCAGTGA TCGGCACAAG CCACGATATC
AGCGAACGAA AGGCGATCGA GCGAGCCCTG GCCGAGAGCG AGGCGGAAGC GCGGTCGTTC
ATGGATAACA TGGTCGATGC CTGTGCGATC TGCGAGACTG TGTACTCCCC CGATGGTAAA
CCAATCGACA TCCGCCTGGT CGAGGTCAAT GCAGCCCTCG CCCAGGAGTT GGGTCGGCCG
GCCGCCGAGA TCGCGGGATG GACCGCCTTC AAGATCCGTC CGGAGCTTAC CCTCCCCTGG
TTCGACCGGT TCCTTGAGGT CCACAGAACA GGGGCAGCTA TGCAGTTCGA GGAGCCGTTC
CCTGTGGTTG GACGCTGGTA CCGTATCGCC GCGTTCCCGG TCCGCGGGGG TCGGGTCGCC
GTGGTGTTCC ATAACATCAC CGAGCGAAAG CAGGCGGAGG AGGCGCTGGC TGAGAGTGAG
GATCGGTATC GCTCCCTGGT CGAGAAAAGC ATCGATGCCG TCCTGCTCAG CTTGCCAGAC
GGCTCTATTC TTGCAGCCAA TGCAGGGGCC TCTCAGATCT TCGGCATGAC CGAGGAGGAA
CTGATACAGG CCGGCCGGGC CTCGCTCATC GATGAATCAG ATCCCAGATT CACGGCCGCC
TACGAGGAAC GGGCCCGGAC CGGCCGGTTC AGTGGAGAAC TGACGTATCG ACGGAAGGAC
GGGACACTCT TTCCGGGGGA GGTGACCTCG GCCCTCTTCA CAGACCGGAA CGGCGCCATT
ATGTCGACGA TGATCATCAG GGACATCACC AAACGGAAAG AGATTGAGGA ATCCCTGAAA
ATCTACTCTG AACGGTTACA GGTGAGCAAC GAGGAGCTCC AACGATTCGC GTACATCGCA
AGTCACGACC TGCAGGCGCC GCTGCGATCG ATCGTCAGCT TCAGCCAGCT CCTCGATCGC
CGATATAGGG GAAAGTTCGA TAAGGACGCC GATGATTACA TCCGATTCAT CGTCGATGGT
GGCGTGCGGA TGCAGAATCT GATCAAAGAT CTGCTCCTGG TCTCCCGGAT AGAGACACAG
GTACAATCGT TCGCCCCGAC TGATGCTCGC ACGGTGGTCG CCGATACTAT TCGCTCGCTT
GAAACCCTGA TCCTGGAGAT CGGTGCCGTG GTGACCGTCG ATCCGCTGCC GATCGTCATG
GCCGACCCAC CGCAGCTCGA GCAGGTCTTT ACAAACCTGA TCGGGAATGC GATCAAGTAC
CGGCGGCCGG AGGTACCGGT TGTCGTCTGG GTCTCTGCCG TTCGTCAGGG CGGTTGGTGG
GAGTTCGCGG TCAGGGACAA CGGAATCGGG ATCGAACCTG AGTACTTCGA CCAGATCTTC
GAGATGTTCA GCCGGCTCCA GACGAAGGAC GAGTATGAAG GAACCGGGAT CGGGCTTGCG
ATCGTCAGAA AGATCGTCGC GCGACATGGG GGAAAAATAT GGGTTGAGTC CACGCCCGGT
AAGGGGTCCA TATTTCACTT CACCCTGCCA GGAGAAAGCA TTAAGGGGAG AGATACGGAT
GTATGA
|
|---|
| Protein sequence | MKQEMERLRQ ELEDLRSRNR ELEETLDAIQ SGEVDAIVVS KEGRKEIYTL EGADHLYRVL
VEKIQEGALT LTVTGMILYA NTAFVAMRRQ RLSAIIGTSL RDHIAPRDRS RFDELLTRSL
TGPGRGEMLV CSGAGSFPVL VSMTPIMVDG SPKLSVVISD RKEDYDRLHL QSRMLDAVAD
AVIATDPAGR IIYWNWSATR TYGWKEAEAM GQSLNEAVVR ELSQDDADRM AEQLGSGNAW
SGEFQVHHRD GHLFPIHVNQ APVFDEDGEF VAVIGTSHDI SERKAIERAL AESEAEARSF
MDNMVDACAI CETVYSPDGK PIDIRLVEVN AALAQELGRP AAEIAGWTAF KIRPELTLPW
FDRFLEVHRT GAAMQFEEPF PVVGRWYRIA AFPVRGGRVA VVFHNITERK QAEEALAESE
DRYRSLVEKS IDAVLLSLPD GSILAANAGA SQIFGMTEEE LIQAGRASLI DESDPRFTAA
YEERARTGRF SGELTYRRKD GTLFPGEVTS ALFTDRNGAI MSTMIIRDIT KRKEIEESLK
IYSERLQVSN EELQRFAYIA SHDLQAPLRS IVSFSQLLDR RYRGKFDKDA DDYIRFIVDG
GVRMQNLIKD LLLVSRIETQ VQSFAPTDAR TVVADTIRSL ETLILEIGAV VTVDPLPIVM
ADPPQLEQVF TNLIGNAIKY RRPEVPVVVW VSAVRQGGWW EFAVRDNGIG IEPEYFDQIF
EMFSRLQTKD EYEGTGIGLA IVRKIVARHG GKIWVESTPG KGSIFHFTLP GESIKGRDTD
V
|
|---|
| |