| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1608 |
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| Symbol | |
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| ID | 7272150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | - |
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| Start bp | 1655225 |
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| End bp | 1657963 |
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| Gene Length | 2739 bp |
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| Protein Length | 912 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643570221 |
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| Product | CRISPR-associated helicase Cas3 |
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| Protein accession | YP_002466643 |
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| Protein GI | 219852211 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.152444 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.436385 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACCG GATCTGACAA TTATTATTCC TACTGGGGAA AGGCACAGAG GGAGGGTGAA
CCAGAGAAGG GGGCCGGTTA TCACCTTCTC GTGTACCACT GCCTCGATGT TGCAGCGGTG
GGACAGAAAT TATTAGAACA AGATCCTTTG CTGATGCACA GGTTCACAGC CCTGACCGGA
TTCAACGACG ATCAGGTCCT TCACCTCATT CCATTTCTCC TCGCACTCCA CGATCTCGGG
AAATTTTCAG ACCGCTTCCA GAACCTGAAG CCCGATCTGA TGGAACTGCT GCAGGGGAAT
AGAGGCTCAC GACGCTACCC CATACGCCAT GACTCAATGG CTCTCTATCT CTTTGAACAG
GATATCCGGG ATCTGGCATG GAAGAAAAAC TGGTTCTGGA TGGATCATGA TCTTCCCTAC
GCTGAAGATG AATGGTTTGA AATCTTTGCT CCCCTGTTCC GAGCGGTCAG CGGTCATCAT
GGAGAACCCC CCCAGCATGA CGAAACTGTG AGCGTGGATT CCCTGTTTCT GGACGGAGAC
CGGGCTGCAG CCCGGGACTT TGCTGTTCAG GCTGCCACGC TTCTTTTGGG CTCCGGCTCC
TATCCGCCAA TCGAATATTC TGAGGGCTGG TTCGAACAGT TCTCCACCGC ATCATGGCTC
CTCGCCGGCC TGGTGACTTT GAGTGACTGG CTTGGATCGA ACCGGACATT CTTTCCATTC
CAGACAGAAG CCATGGACCT GGCTGTGTAC TGGAAGAATT TCGCCCAGAA GGGTGCAGAG
GATGCTGTTA GGGATGCCGG GGTGCTGCCG GCCACGGTCT CATCGAACTG TGGGATGGCC
GGCCTCTTTC CACCAGATCT GCCTCCCAAA ATTACCAGTC CTTCCCCCAT TCAGACGTAC
CTCTCATCCT GTTCACTTAC CCCGGAACCA CGCCTCACTA TCATCGAAGA GACGACCGGG
GGTGGAAAGA CTGAAGCAGC TCTGGTCCTC GCTCACCGAC TGATGAACTA TGGATGCGGA
GAGGGGATCT TTATGGGTCT GCCCACCATG GCGACTGCGG ATTCCCTGTA TGGCAGAATT
GCACAGACCT ACCAGCGGAT GTATACGGGC GATCAGCGGG CATCTGTTGT ACTGGCCACC
AGTGCGAGAG ATCTATCAGA TCTCTTTAAA AAATCGGTGC TGCCACCAGG ACAGTGGAGC
CATGAACAGT ACAAGCCCGG AGAGGAGACT GCATCTGCTA CCTGTACAAT CTGGCTTGCC
CAGAACCGAA AGAAAGCGCT GCTCGCTCAG GTGGGTGTCG GAACCATCGA CCAGGCATTA
ATGGCTGTAC TTCCATTTCG TCACCAGTCT CTGCGGCTGC TCGGATTGGC CCGAAATATT
CTGATCGTCG ATGAGGTACA TGCGTATGAT CCGTACATGC ACACAGTCCT CTGCGGATTG
CTCAAGTTTC AAGCAGCATT TGGAGGCAGC GCGATCCTCC TATCAGCAAC CCTGACCATG
GCACAGAGAC AGGATCTGAC CAGTGCCTTC TGTGCAGGAC TCGGACGGAG AGCAAAAACT
CTGACCGATG AGACGTATCC CCTGATCACC ATGGCTACGG CCCAGGATGT AACGGAGACT
CCAATCGATT CATCTGCTGC CAGGGTTCGA ACGGTCAGGG TGCAGATGGT CGATGATTCT
GCTGATGTCC TAGAACAGAT CGTCAGAGCT GCTGGTGATG GCCGATGTGT CTGCTGGGTC
AGAAACACCA TCGACGATGC GATCAACGCC TTCAATGAAC TCAACACGAG GCTGGAGAGC
AGACAGGTGC TGCTCTTTCA TGCCAGGTTT GCCCTGGGTG ATCGTCTGGA TATCGAGAAA
AAGGTACTGG ACACTTTTGG AAAAGAGAGT CTGGATCCAA TCAGACGGGG GATGGTCCTG
GTCGCCACCC AGGTGGTGGA ACAGTCACTT GATCTCGACT TCGATCTGAT GATAACCGAT
CTCGCTCCAA TGGACCTGAT CATTCAGCGG GCCGGCAGGC TTCACCGTCA TCCGCGAGGA
GATCGGGGGG AGGCCGTAAT GGTAGTGCTG GCTCCCCCTC TGACCCGTAC ACCAGATCCT
GACTGGTATA AGCGGGTCTT TCCAAAGGGT GGATATGTCT ACCCCAACCA TGGGCAGCTC
TGGCTGACGG CTCAACTGCT CGATACAAAG GGAAAGATTG TGATGCCTGA TGGGGCCAGA
GATCTCATCG AAGGGGTATT TGGAGATGGT GCACAGATCA GGATTCCATT GTCACTCCTA
CCGCGCGAGG TCCTGGTGGA CGGAAAAAAG CGGGGAGACA TTTCAATCGC ACGCCTGAAT
ACCCTTGAAG TGTCCGATGG ATACCGGAGA ACCCCCACGC AGTGGGTGGA GGAGGCCCAC
GTCTCCACCC GACTCGGTCA GCTCACCAGC ACCCTCGTAC TGGCCAGATG GGACGGCACC
ACGCTGACGC CATGGTATTC CTCCAACCAG AACGCATGGG ACCTGAGTCA GGTCCATATT
GCAGAGAAGA AGGTTGCCAG CGCAGCAGTG TTTGAAGGTG AACTCGGTGC GGCGGTGAAA
CGATTAGAAG ACCAGATTCC GGGTCTTGGT AAATGGTTGA TTCTCGTTCC ACTCAGTTGT
ACCAGTGCTG GTACATGGGA AGGGCCTGCC AGAAACGATG CGGACGAGAA TGTTACGGTG
ATCTATGATC CTGTTTTGGG TTTCATGATG AAAAATTAG
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| Protein sequence | MKTGSDNYYS YWGKAQREGE PEKGAGYHLL VYHCLDVAAV GQKLLEQDPL LMHRFTALTG
FNDDQVLHLI PFLLALHDLG KFSDRFQNLK PDLMELLQGN RGSRRYPIRH DSMALYLFEQ
DIRDLAWKKN WFWMDHDLPY AEDEWFEIFA PLFRAVSGHH GEPPQHDETV SVDSLFLDGD
RAAARDFAVQ AATLLLGSGS YPPIEYSEGW FEQFSTASWL LAGLVTLSDW LGSNRTFFPF
QTEAMDLAVY WKNFAQKGAE DAVRDAGVLP ATVSSNCGMA GLFPPDLPPK ITSPSPIQTY
LSSCSLTPEP RLTIIEETTG GGKTEAALVL AHRLMNYGCG EGIFMGLPTM ATADSLYGRI
AQTYQRMYTG DQRASVVLAT SARDLSDLFK KSVLPPGQWS HEQYKPGEET ASATCTIWLA
QNRKKALLAQ VGVGTIDQAL MAVLPFRHQS LRLLGLARNI LIVDEVHAYD PYMHTVLCGL
LKFQAAFGGS AILLSATLTM AQRQDLTSAF CAGLGRRAKT LTDETYPLIT MATAQDVTET
PIDSSAARVR TVRVQMVDDS ADVLEQIVRA AGDGRCVCWV RNTIDDAINA FNELNTRLES
RQVLLFHARF ALGDRLDIEK KVLDTFGKES LDPIRRGMVL VATQVVEQSL DLDFDLMITD
LAPMDLIIQR AGRLHRHPRG DRGEAVMVVL APPLTRTPDP DWYKRVFPKG GYVYPNHGQL
WLTAQLLDTK GKIVMPDGAR DLIEGVFGDG AQIRIPLSLL PREVLVDGKK RGDISIARLN
TLEVSDGYRR TPTQWVEEAH VSTRLGQLTS TLVLARWDGT TLTPWYSSNQ NAWDLSQVHI
AEKKVASAAV FEGELGAAVK RLEDQIPGLG KWLILVPLSC TSAGTWEGPA RNDADENVTV
IYDPVLGFMM KN
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