| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1605 |
|---|
| Symbol | |
|---|
| ID | 7272147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1651822 |
|---|
| End bp | 1652928 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643570218 |
|---|
| Product | CRISPR-associated protein, Cse4 family |
|---|
| Protein accession | YP_002466640 |
|---|
| Protein GI | 219852208 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01869] CRISPR system CASCADE complex protein CasC/Cse4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.936152 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAT TTGTTCAATT ACATATGCTT GTATCGTACC CGCCGTCGAA CCTGAACCGT
GACGACCTCG GAAGACCAAA GACTGCGGTG ATGGGTGGTC AGCAGCGGCT ACGGATCTCT
TCACAGAGTC TGAAGCGAGC ATGGCGCGAG TCTGAGGTCT TTTCTACTGA ACTGGCCGGT
CATCAGGGAA TTCGAACGAA AGAGATGGGA AAATTGATCG CCGAGTCGTT CCAGACCGGA
ATCCCACTCA GGTCTCTGAT TGCAGGCGAG AAGGATCAGT CAGCTGTGTT CACCCCAATC
CAGGAGAAAG AAGCGGTGAA ATATGCCCAT ATAATTGCAG GCGTCTTTGG TAAAATGAAG
AAGGGAGATG ACAGTCTGGA GATTGAACAA CTGGCCCATT TCAGTCCAGA GGAAATTCTA
CAGATTGAAA ACTTTATTAA AATCGTCGCT GAGAAGGGGA AAGAGCCTGC TGCGAACGAG
ATGGATCTCC TTAAAAAAAG ACATACAGCT GCTGATATTG CAATGTTCGG GCGGATGCTT
GCCTCTTCGC CGGCCTATAA TACCGAAGCT GCGGTCCAGG TCGCCCATGC TATAACCGTC
CATCCTGTCG CCGTCGAGGA TGATTACTTC ACAGCAGTGG ACGATCTGAA TCGTGGTGAA
GAGGATGTCG GGGCTGGACA TATCGGAGAT CTCGAATTTG GAGCAGGTCT CTTCTACCTG
TATATTTGTA TCAATACCGA CCTGCTTCGG GAGAATCTCA TGGATGATCC GAAACTGACC
AGCCTGGCAC TCAGATCCCT TATAACGGCC GCGACCACGG TCTCCCCCTC GGGGAAGCAG
AACTCATTCG GATCACGAGC CTATGCTTCA TACCTTCTTG CAGAGAAGGG ATCACAGCAG
CCTCGCTCCC TCTCGGTCGC GTTTCTCTCT CCAAAGAGAG AGGAGAAGGA TCTTCTTGGA
GCAGCAATTG AGTCCCTGCA GGTGACAAAA AGTAGGATGG ACAACGCCTA TGGACCCTGC
AGTGAGGGAT CTGCCGAGAT GAATCTCCAT ACCGGTGAGG GGACCCTCGC AGAGATCCTC
GACTTTGTGG CTGGTACCCA TGCCTGA
|
|---|
| Protein sequence | MTEFVQLHML VSYPPSNLNR DDLGRPKTAV MGGQQRLRIS SQSLKRAWRE SEVFSTELAG
HQGIRTKEMG KLIAESFQTG IPLRSLIAGE KDQSAVFTPI QEKEAVKYAH IIAGVFGKMK
KGDDSLEIEQ LAHFSPEEIL QIENFIKIVA EKGKEPAANE MDLLKKRHTA ADIAMFGRML
ASSPAYNTEA AVQVAHAITV HPVAVEDDYF TAVDDLNRGE EDVGAGHIGD LEFGAGLFYL
YICINTDLLR ENLMDDPKLT SLALRSLITA ATTVSPSGKQ NSFGSRAYAS YLLAEKGSQQ
PRSLSVAFLS PKREEKDLLG AAIESLQVTK SRMDNAYGPC SEGSAEMNLH TGEGTLAEIL
DFVAGTHA
|
|---|
| |