| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1516 |
|---|
| Symbol | |
|---|
| ID | 7271061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1565298 |
|---|
| End bp | 1569113 |
|---|
| Gene Length | 3816 bp |
|---|
| Protein Length | 1271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643570131 |
|---|
| Product | AAA ATPase |
|---|
| Protein accession | YP_002466553 |
|---|
| Protein GI | 219852121 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.18518 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTT ACAATCTCAG CCCCTCGATG CTCTCGCGGT ACTTCTTCTT TGAGTGCCCG
CGGTACCTGC GATACCACGC GACTCCCAAG GCAGAGCGGA TGATCAATAA ATTGCCTGCC
GGCAAGGTCA ACACCGCCCC GGCGGCCAAA GCCCTCCTCG ATGCCGGGTT CTCATGGGAG
GAAGAGGTGG TCCGGAAGCT CGAAGGCCAG GTTCAGATCG CTTCAGGGAG CGGTGCATTG
CATGAGCGGG TGCTCGAATG GCAGGAGACC CTCGACGGCC TCTCCACCCT CTCACCCGGG
CATCACCTCT ACCAGCCGAC CCTGCAGCCG CCACCGGACT TCCTCTCCCA GTACGGAGTC
AGCAGCGACC TCTGCAGATT CGGGATCAGC CGGCCCGACC TGATCCGCTG CACGACGGTG
CACGGCAAGC GGAGGCTGCA GATCATCGAT GTCAAGGCCA GCGAATTTTT GAAAGGCAGC
CACCGGATCC AGGTGACCCT CTATGCCCGG ATGCTCCAGG AGGTGCTGAA AGCCAACGAT
CTCCCGCTCG CGGCCGACCA GGTGCAGGCC GGGATCTGGC TGTACAACCA GCCCGAACCG
GTCTGGTTCG ATCTCATCCC GTCGCAGCGG ATCCTCGAGG ACTTCTTCTC CCATAAACTC
AACGAGATCC TGACCGCCAG CCCAAAAGAC CTCGGGTGGC ACCTCTATTA CCGGTGCGAG
TGGTGCGAGT TCTACGAATA CTGCCGGAAG GAGGCTGAAG AGAAGCAGTC GGTCTCGCTC
CTTCCGTTCC TCTCGGTCGC CGGCAGGGCT TACCTCCGCG AGGCCAGGTG GGAGAAGAAC
GGGTCGGTCG ACTCCCTCGG CGACCTGACG ACCTGCCTTG AACGGGATGA TGCACCCGTG
ATATTCAATG GCTGCGGGTC CCTCATGAAC CGGCGGGAGC GGTACGCCCA TGCCCTGCAG
GCCCTGGACC GGCACGAGGT GGTCAGGCAC GGCGGCTACT CGGTCGGGTT TCCCAGATAC
GAGTCGGTCC GGATCGTGCT GACCCTGCAG GAGAGCCCGG TCGACGGCTT CATCTATGCC
GCCGGCGTCC GACGATTCGG CGGGAGCGAC GGGCCGTTCG GGACGCCGTT TGGCAGGACG
GTCTTCGTTG CCAGATCATC GGAGGAGTGT GCCACTGTCC GCACCAAATT TATCGACCAC
CTGTACGGAC TGCTGGAGAT CGTCGACGGA TACAACCGCG ACCATCTGGA GTGGAACGAA
CAGTTCTCCC TGCAGACCTA CGTCTTCGAC ACCTACGAAC AGCGCCTCTT CATCAAACTC
CTCTACGAGG CCGTGAAGGA TCCGGACCTC GCCCCGAAGG TACTGACCCT CCTCTTCCAC
TTCCAGGACA CGACCCTGGC CGAAGCAGAC GAACACCCCG GCAAGGAGGT GCCCTTCCCG
CTGATCGTGC TGACCGGGGT GATCCGGCGG CTGGCCGCAC TCCCGATTCC GATCTTCTAC
CGACTCCCCG AAGTCCAGGA GGTACTCCCT GCTTCTCACT ATCCCCAGAC ATTGAACCCC
TCCAGACGGT TCTGGTTCGA CCTCTCCAAC ACGCTCCGGA GCGACGTGAT CCTCTCGGTC
TGGAATGGAC AGAACGTGGA GGCGGGCGTC GAAGCGATCC AGGAGGAACT GGGCCGGCGA
CTCGACGCGG CCTCCTCGGT CGTGACCGGG ATCCGGGAGG CACTCGGCGA TAGTCTCGTC
GCCTGGGCCC CGAAGTTCTT CCTCCCCGCC CCGATGGACT TCGTCCATCC CCTCCTCTCC
AGGCTCGCGT TTATCGTCCG GTACGAGTCG TTCATCGCAG CCCTCGAAGT CCGAGAGAAG
CGGTCGCTCC CGGCCTCGGA AAGGCTCGAA CTGGGGATTA GCGTCCCGGT GGTCTCCCTC
GGCGACGACC GCTGGAAACT TGAACAGCCG CTCGACCCGT ACCTCTTCGA GGCACAGGGA
ACGATCCGGT TGATCGTCCC GCCCGGGGAC GAAGGGGAGC GGGCCCAGCT CTGCTACAAC
GACTATGAAC GGAGGAAGCG GCGGTACACC CCGAAGAGTT CGATCCTCAG ACAGGCGACG
GTGGAGGGGA CGCTACCCGA CCTTCGGACC GGCCTCATCA AACAGGTCAG CCTGAAAGTC
GAACAGAAGA AGGAGATGGA ACCGTTTCAG AAGGGGGACC CTGCCGTCCT TTACCCGGTC
TTCATGGACT ACAACGTCGA CACGATCCTT TCACGGTTGA GCGAGTGCGA CCTGGATGAT
ACCGACCTGA TCCGGTTGAT CGAGGAGCCC CTGACGGTGG CCACGCCCCT CGCCGAGGAT
CCCGGGTTCG TCGAAGCGGC CAGGGGGTAT GCGAATTCCC ATCACCTCAC CAGCAGCCAG
CGGGCGGCCT TCGATCAGAT CCTGAAGAAC CGGCTGACCC TGGTATGGGG TCCGCCCGGC
ACAGGCAAGA CCACGTTTCT GGCTGCGGCG ATCCTCTCCC TCGTCCAGGC CCGGCAGGAG
CAGAGACGGG GAATCCGGAT CCTGGTGACG GCCTTCACCC ACAGCGCCGT CGAGAACCTG
CTCAGCAAGG TTCAGTCCCA GGTCCACGAC CTGCCGGTCG GAAAGGGGGT GCGGGTCGTC
AAGATCGACC GGGACGAGAC CTATCGGCGG AACGGCCCGG CCTCGACCAC CAACGATGCA
ATCAAGGCCG GCCTCTTCTC CGACGACCCA TCGCTGGTGC TCGGCGGGAC CGTGTACGGA
ATATACAAGG CATCGAAATA CCTGGCACCC TTCGACCTGC TGATCGTCGA CGAGGCCTCG
CAGCTCAGGT TCGGGGAGCT CTCGCTGGCC CTCGCGGCCC TCAGGCCCGG CGGACGGCTG
GTCTTTGCCG GCGACGACCA GCAACTGCCG CCGATCATCA AGGGCGAGTA CCCCGAACCC
GAGGACGGTC TCCCCGGGCT GCACGAATCG ATCTTCCGCT ACCTGCGCCT CCGCGACGAT
CACGACCAGC CCCGGTACAC GGCCGAACTG CTCGAGAACT GGCGGATGAA CAGCACCCTC
TCCCGGTTCC CGGCGGCGGC CCTGTACGGG GACGGCTACG TGCCGGCGAC ACCGGTTCTT
GCAGAGCAGC GGCTCTCCCT GAAACCGGCC GGCCGGCCGG GGAGTTCCCT CGATGCGATG
CTGGCCTGGA TCCTCGACCC GGCGTACCCG CTGGTGCTGG CCGTGCTTGA GGACGTTCAG
GCCACGGTCG AGAACCAGGT CGAGGCAGGG ATCGTCGCGG CCCTGGTCGT TCAGCTCCGT
GAACGGCTCC TCGCCCCGGA GAGCGATCGG GGGTACCCCC TGACCATGGA GGGGGACCGG
CAGTTCTTCG AAGAGGGTCT CTTCATAGTC TCCCCGCATC ACGCCCAGAT CGAAGCGATC
CGGAAGGCCG TCAACGGGTT GTGGATCTGG CACAGCCCCC CGTTCGTCGA CACCGTCGAC
AAGATGCAGG GGCGGGAGGC CGATGCTGTC ATCGTCAGTT ACGGGGTCAG CGACCCTGAG
ACGGCACAGC AGGAGGCCAC GTTCATCTAC AGCCTGAACC GGCTGAACGT CTCGGTGACC
CGGGCCAAAA AGAAATGTAT CACCTTCCTC CCCCGACCGC TGTTGACCCC CTCGTACGAA
CTGCTCCAGC ACGAGGAAGG GCTCAAAGGG CTCGGGCATA TGCTGAATTT GCAGGCGTTC
TGCAGCGAGA ACGGGGAGAC GCGGACCTTC TCGTTCGTTG CAGAAGAGAC CGGGGAGCAG
GTCCGGCTGA CCGTCCTCCG GACCCGGGTC GACTGA
|
|---|
| Protein sequence | MTRYNLSPSM LSRYFFFECP RYLRYHATPK AERMINKLPA GKVNTAPAAK ALLDAGFSWE
EEVVRKLEGQ VQIASGSGAL HERVLEWQET LDGLSTLSPG HHLYQPTLQP PPDFLSQYGV
SSDLCRFGIS RPDLIRCTTV HGKRRLQIID VKASEFLKGS HRIQVTLYAR MLQEVLKAND
LPLAADQVQA GIWLYNQPEP VWFDLIPSQR ILEDFFSHKL NEILTASPKD LGWHLYYRCE
WCEFYEYCRK EAEEKQSVSL LPFLSVAGRA YLREARWEKN GSVDSLGDLT TCLERDDAPV
IFNGCGSLMN RRERYAHALQ ALDRHEVVRH GGYSVGFPRY ESVRIVLTLQ ESPVDGFIYA
AGVRRFGGSD GPFGTPFGRT VFVARSSEEC ATVRTKFIDH LYGLLEIVDG YNRDHLEWNE
QFSLQTYVFD TYEQRLFIKL LYEAVKDPDL APKVLTLLFH FQDTTLAEAD EHPGKEVPFP
LIVLTGVIRR LAALPIPIFY RLPEVQEVLP ASHYPQTLNP SRRFWFDLSN TLRSDVILSV
WNGQNVEAGV EAIQEELGRR LDAASSVVTG IREALGDSLV AWAPKFFLPA PMDFVHPLLS
RLAFIVRYES FIAALEVREK RSLPASERLE LGISVPVVSL GDDRWKLEQP LDPYLFEAQG
TIRLIVPPGD EGERAQLCYN DYERRKRRYT PKSSILRQAT VEGTLPDLRT GLIKQVSLKV
EQKKEMEPFQ KGDPAVLYPV FMDYNVDTIL SRLSECDLDD TDLIRLIEEP LTVATPLAED
PGFVEAARGY ANSHHLTSSQ RAAFDQILKN RLTLVWGPPG TGKTTFLAAA ILSLVQARQE
QRRGIRILVT AFTHSAVENL LSKVQSQVHD LPVGKGVRVV KIDRDETYRR NGPASTTNDA
IKAGLFSDDP SLVLGGTVYG IYKASKYLAP FDLLIVDEAS QLRFGELSLA LAALRPGGRL
VFAGDDQQLP PIIKGEYPEP EDGLPGLHES IFRYLRLRDD HDQPRYTAEL LENWRMNSTL
SRFPAAALYG DGYVPATPVL AEQRLSLKPA GRPGSSLDAM LAWILDPAYP LVLAVLEDVQ
ATVENQVEAG IVAALVVQLR ERLLAPESDR GYPLTMEGDR QFFEEGLFIV SPHHAQIEAI
RKAVNGLWIW HSPPFVDTVD KMQGREADAV IVSYGVSDPE TAQQEATFIY SLNRLNVSVT
RAKKKCITFL PRPLLTPSYE LLQHEEGLKG LGHMLNLQAF CSENGETRTF SFVAEETGEQ
VRLTVLRTRV D
|
|---|
| |