| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1453 |
|---|
| Symbol | |
|---|
| ID | 7270058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1500161 |
|---|
| End bp | 1501138 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643570077 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_002466499 |
|---|
| Protein GI | 219852067 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCAG ATGACAGAAC CGGACGTACT GATACCGTCA TTGCCGTCGA CCTTGGAGCG
ACCAACCTTC GGGTGGGGCT TGTCAATGAA ACCGGGCGCA TTGAACGGTT GAAAGTGACC
ACACTTCCTG CTGATCTGCC TGATGCGGAG ACCATCTCCG ATCTCATCAT CCGGACAATT
CATTCGCTGG CATCAGACGA GGAGATCGGG ATGTCGGCAG GCATCGGTAT CGGGTCGGCA
GGACCGATAG ACAGCACCCA CACCTCGATC GTGCATCCCC CGAACATCCC CCTCGATATC
ATTCCCCTGT CGGACCCGAT CAGTGCAGCG TTCAACCTCC CGGTGCTGCT GATCAACGAC
TGCTTTGCAG GTCTCCTGGG CGAGGCGTGT TTTGGCGAGG GTACGGGATC GAAGAATTTC
GTCTATGTAA CCATGTCGAC CGGCATCGGT GCCGGGATCA TTGCAAACGG AAAAATACTT
ACCGGTCGAT CAGGAAACGC CGGGGAGATC GGTCATCTGT TCGTCGACAG CGATTATAAC
CTGACCTGCG GGTGCGGCAG AAAGGGACAC TGGGAAGGAT ATGCATCCGG CCGGTTCCTG
CCCCGCTTCT ACCATGAATG GCTGAAGAAG AATGGATGGG ATTCCGGGGA TCAGCAGATA
CACTCTGCCC GGGATGTCTT TGACGCCATT CGAGAAGAAC AGGGTTCTGA GAAATGCGGT
TTTATTCATG AACTCGGGAG ACTGAATGGA CGGGGGATTT CAGATCTCAT TGTTGCCTAT
GAACCGGATA CGATCGTCTT TGACGGTTCT GTTGTTCTGA ACAACCAGGA CCTGATCATT
CCCCTGATCG AGCAGTATGC CGACCGTTAT CTGCCGATGC CCCGGCTGAC TGTGAGCAGT
CTTTCGGGTT TTGCACCGCT TCTTGGTTCT TCGGTCATTG CCCGGGGATA CGAGACACGG
TTTGGATCAC TGGAATAG
|
|---|
| Protein sequence | MTPDDRTGRT DTVIAVDLGA TNLRVGLVNE TGRIERLKVT TLPADLPDAE TISDLIIRTI
HSLASDEEIG MSAGIGIGSA GPIDSTHTSI VHPPNIPLDI IPLSDPISAA FNLPVLLIND
CFAGLLGEAC FGEGTGSKNF VYVTMSTGIG AGIIANGKIL TGRSGNAGEI GHLFVDSDYN
LTCGCGRKGH WEGYASGRFL PRFYHEWLKK NGWDSGDQQI HSARDVFDAI REEQGSEKCG
FIHELGRLNG RGISDLIVAY EPDTIVFDGS VVLNNQDLII PLIEQYADRY LPMPRLTVSS
LSGFAPLLGS SVIARGYETR FGSLE
|
|---|
| |