| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1451 |
|---|
| Symbol | |
|---|
| ID | 7270056 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1497573 |
|---|
| End bp | 1498586 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643570075 |
|---|
| Product | basic membrane lipoprotein |
|---|
| Protein accession | YP_002466497 |
|---|
| Protein GI | 219852065 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.115557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA AATACCTTTA TTTCGGAATC CTGGTTGCAG CAGTCATTGT TGTAGCAATC
GTTGCAGTAA GTGTCCTGCC GGATAAACCT GCAGTTCCGG GCGTGTATAT CGTGTACCCA
TCAGAGAAAG GTGACCTCTC GTACACCGAC AGTGCATATC AGGGTCTCGT GGCAGCCCAG
AAAGCGATCT CCTTTACCAC AAAAGAGTTC ATGCCGCGTG AGAGTGATTC CCTGCCAGGG
CTGCTCAACA ACATCAGCGG ATCGGAAAAA CCGGGTCTCG TCATAACGAT AGGGTTCCAG
TATACGAACT ACACCCGGCA GCTCGCACAG GATCACCCGG ATATCCGGTT CCTCGCCATC
GACCAGTCGG GAACCGGGTC CGATACACTC AGGACGTATG ATATCACCTC CTACGGTGAC
AGTTACCTGG CCGGCGTCCT TGCAGCATCG GCAACCAAGA CCGGGCGGGT CGGGATCATC
CTTGGGATGC AGTCGGACCT GCTCGATACG TTCCTGCAGG GGTACACGGC CGGCGTCCAT
GCTGTCAACG CATCGATCCC CATCGATCAT ACCTATGTGC ACCAGTACAC CATCGACGGG
TTCAGCGATC CCGCAGAGTC AGGCCGGATT GCTGAAGGGA TGTACCGCAA TGGAACGGAC
GTGATCTACA CCTGTGCCGG GTACTCCAAT ACCGGGGCGA TTGCGGTGGC AAACAATGCA
ACCGGGGAGT ATATCATCGG CACCGATTCC GACCAGTCCC CGCTCGGCCC CAACGTCGTG
CTTGCGTCGG CAGTCAAACG GGTGGACCGG GTCGTTTCTA CCGGGATCAT GCAGGACCTC
AACGGGACGT TCACCGGTGG CGAACAGGTG GCCGGGCTCA GGGAAGGGGT GACCGGCCTG
GTGTTCAACC AGAAATTTAC ATCCTATAAC GAAACAGTCA ATGCATGGGA ACCGCAGGCC
CAGGCAGGGG AAGCCCGGTA TCTTCTGTCC CGTGCTTCAT CGGTTCAAAA ATAA
|
|---|
| Protein sequence | MDKKYLYFGI LVAAVIVVAI VAVSVLPDKP AVPGVYIVYP SEKGDLSYTD SAYQGLVAAQ
KAISFTTKEF MPRESDSLPG LLNNISGSEK PGLVITIGFQ YTNYTRQLAQ DHPDIRFLAI
DQSGTGSDTL RTYDITSYGD SYLAGVLAAS ATKTGRVGII LGMQSDLLDT FLQGYTAGVH
AVNASIPIDH TYVHQYTIDG FSDPAESGRI AEGMYRNGTD VIYTCAGYSN TGAIAVANNA
TGEYIIGTDS DQSPLGPNVV LASAVKRVDR VVSTGIMQDL NGTFTGGEQV AGLREGVTGL
VFNQKFTSYN ETVNAWEPQA QAGEARYLLS RASSVQK
|
|---|
| |