Gene Mpal_1305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpal_1305 
Symbol 
ID7271165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosphaerula palustris E1-9c 
KingdomArchaea 
Replicon accessionNC_011832 
Strand
Start bp1338595 
End bp1339608 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content54% 
IMG OID643569939 
ProductUroporphyrinogen decarboxylase (URO-D) 
Protein accessionYP_002466362 
Protein GI219851930 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01463] methyltransferase, MtaA/CmuA family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.536887 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAGCA TTGAACGCAT CGTGTCAACG CTGAATTTTG AAAAACCAGA CCGGGTGCCG 
GTGATCGCAC AGGTCTTCGG TCATGCGGCA ACAGTAGCCG GCATGAATCT TGGTGAGTAT
ATCAGGGATG GCGAACTGCT TGCACGGGGT CAGATCAGGG CCCTGGATCG GTACGGCTAT
GATGCAGTCT TTGCCCTGAT GGACACGTCC GTGGAGACCG AAGCAGCTGG ATCTGTCCTG
ACTTATTTTA AAAATAAATA TCCTATCGTC AAATCGTATG CTCTCTCGCA GGACACTGAT
CCGGACAACC TATCAGTACC GGATCCGCAC CAGGCCGGGC GTATGCCGGC TCTCTTAAAC
GCCGCAGGGA TCCTGCGGGA GGAGATCGGT GACGAGGTGC TGGTTGTCGG CTGTGTGCTG
GGGCCTCTAA CCCTGGCAAC CCAGCTGCTC GGTATTGAAC AGGCTCTCTA TCTGGCAATC
GATGATCCTG AACAGTTTGG CCGTGTGCTG GATTTCGCGA CAGACGTCGT TATCCGATTT
GGTACAGCGC AGATCGAAGC GGGAGTGCAT CTACCAGTGG TTTTTGATCC ATCAGCTTCA
CCAGCTGTGA TCCCCCCCAT GTTCTTTTAC GAGTTTGAGG TGCCACGGCT TACACGGTTA
TTCTCATCCT TAAAAGAACA TGGCGCGGTA GCAAACTGGC TGCATATCGC CGGGTCTGTC
GGCTCTATCC TTCCGTTTTA CCCGGAAGCC GGCGTTGATA TTGCAAATTT CGATTACTCT
GTCAACCCGC TGGATGCTCA GGAAGCACTT CCCAGAACCG TTCTTGATGG TAACATCAGG
CCATGGTCCT TTGTGGAGGC ACCACCTGAA GAGATCACAC GTGAATCGTC CCGACTCATG
GACAGGTTCG CGCACCGTGG GGGTTTTATC CTGTCGTCAG GGTGTGAGAT TCCCCTGGAG
TCCCGACAGG AGAATGTGAT GGCCCTGGTC ATGGCTGCCC GCACGAGGGG CTAG
 
Protein sequence
MNSIERIVST LNFEKPDRVP VIAQVFGHAA TVAGMNLGEY IRDGELLARG QIRALDRYGY 
DAVFALMDTS VETEAAGSVL TYFKNKYPIV KSYALSQDTD PDNLSVPDPH QAGRMPALLN
AAGILREEIG DEVLVVGCVL GPLTLATQLL GIEQALYLAI DDPEQFGRVL DFATDVVIRF
GTAQIEAGVH LPVVFDPSAS PAVIPPMFFY EFEVPRLTRL FSSLKEHGAV ANWLHIAGSV
GSILPFYPEA GVDIANFDYS VNPLDAQEAL PRTVLDGNIR PWSFVEAPPE EITRESSRLM
DRFAHRGGFI LSSGCEIPLE SRQENVMALV MAARTRG