| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1007 |
|---|
| Symbol | |
|---|
| ID | 7271741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 1034566 |
|---|
| End bp | 1036659 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643569644 |
|---|
| Product | periplasmic copper-binding |
|---|
| Protein accession | YP_002466078 |
|---|
| Protein GI | 219851646 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.525995 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.505832 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCAT ATCCTTCGCT CAGGTCTCTC CTCATCCTTC TCATCTGCTG CAGCCTTCTC
ATTTTCCCGG CAGCAGCCGA AACGGTGAAC GAATCATTGA AAATGCCGGC ATTCTTCTCG
GATATTCAGA ACAGGGGGGT AGATCTCCAC GCCACCGACG AGACACCAGT CTACACGGTG
ATGCACCCCT CATCCGAGCA GCTCAAGGAA TGGGATGCTC AGTACAATGC ATTACCCCTG
GTGTCGGTGC CGGCTACCGG TTCTTCCAGC CAGCTCCAGA ATAATACCAC ATCTGTGGGC
GGATACAAGG ATCTCCTCCC TTACCTGGAT TACATCCCGG CTGAACGAAA TCAAGGATCG
ATCGGGAATT GCTGGGTCTG GGCGGGAACC GGGGTGATGG AGATCGCCCA TGCCGTCCAG
AACGGGGTGA AGGACCGATT CTCGATCTCG TACCTGGACG CCAACTATAA TGGTGGTTCT
GGGAATAAAT GGGCAGGGAC TGGAGGAGAT TTCTTTAATC TCGCTAATTT TTATACCACA
ACCGGGATAG CAGTTCCCTG GTCCAACCTG AACGCTGAGT ACCAGGACGG GACCACATGG
TCAGGGACAG AACAGCGGTC CTACGAGCCT GCCTTTGCAA TCTCCACAGA ACCCCACTAC
CAGATCTATC AGATCAAAGC GCAACGGATC GAGACACGAC ATATTGGCAA CGAGCAGGCG
ATCAGCAACA TTAAGGCTGT GCTCGACCAG AACCGTGCCA TTGGTTTTGG GTTCAATCTC
CCCAATTCTA CGGCCTGGGG ATCCTTCATA GAGTTCTTCA TGAACAGTTC GGAGGAGACC
GCATGGAACA TGACCCCCTG GCAGAACACA CTCTATAATG AAAACGAGGG CGGGGGGCAT
GAAGTACTCT GCGTCGGATA CAATGACACC GACCCGACGA ACAGGTACTG GATCATGGTC
AACTCCTGGG GAGTCTCGGA TGGGCATCCA CGCGGCGTCT TCCGAGTTTC GATGGACATG
GACTACTCTG CGACAATGCA GTTCAGAGAC AATGATGATT GGGCTGCCCT GGTGTGGCAG
ACGCTGGACG TCAACTTTGC AGCCACCCCA TCACCGGCGC CGAAGGAGAT CAGTTCCCTC
CCGTACACCT GCTCGGTTCC CGGTGAATAT TACCTTGCAA AGGATCTGAT CAGCAGCGAC
GCCGATACGG GGATCCTGGT CACGGCACAG AATGTGACGA TCGACGGGAA GGGACACCTC
CTTCGGGGCT CCGGCCGGCA GGGATCGGTC GGGATCCTCG CGTACAACAA CGGAGACCCT
GTCGATGGAC TGAATATCAC CAACCTGGCC ATCTCAAACT GGGAGGACGG GTGTTACCTG
TATCATGCCA CCAACGGATC GGTGAATGAT ACCACCATCT CCGACTGCTC GTATGCCGGA
ATCTTCCTGG ATGGAGAAAC TACCAACCTC GCAATCGCTG ACAACACACT CACCTCCAAC
TATCGCGGCC TCCTCTCCCG TTCCACAGCC GATATCAGGG TCGAGCACAA CAGGATAACC
GAAAGTCTGA ATACCGGGCT GTACCTCCTC TCAATGAACC AGAGTTTAAT CGCAGACAAC
CAGATTGTTA ACGGACAGAA CGTAATCATC TCTGGGTGGG TCAATACGAC AAGTTGGAAC
ACCAGTAAGA CCACCGGACA GAACCTGGCA GGCGGCCCGT ACCTGGGCGG CAACTACTGG
GGGAACCCCA CACAGACCGG GTTCTCCGAC CTTGCAGTCG ATCAGAACCG GGACGGATTC
GCTGACAGCC CAAACCAGAT CGCAGCCGGC ACCATGGACC AGTTCCCCCT CGTCGCCTAT
GCGAACCCTG GTCCACAGCC GATCCCGCCG AACCAGCTTG ACCCGACCGA TCCCGATCAC
GACAGGCTCT ACGAGGATCT GAACGGGAAC GGCAAGCTCG ACTTCGGCGA TGTGACCACC
TTCTTCAACC AGATGGACTG GATCGCCGAC CATGAACCGG TGCAGCTCTT CGACTTCAAC
GGCAACCAGC AGATCGACTT CGGCGACGTC GCCGCGCTCT TCTCACGGCT GTGA
|
|---|
| Protein sequence | MSSYPSLRSL LILLICCSLL IFPAAAETVN ESLKMPAFFS DIQNRGVDLH ATDETPVYTV
MHPSSEQLKE WDAQYNALPL VSVPATGSSS QLQNNTTSVG GYKDLLPYLD YIPAERNQGS
IGNCWVWAGT GVMEIAHAVQ NGVKDRFSIS YLDANYNGGS GNKWAGTGGD FFNLANFYTT
TGIAVPWSNL NAEYQDGTTW SGTEQRSYEP AFAISTEPHY QIYQIKAQRI ETRHIGNEQA
ISNIKAVLDQ NRAIGFGFNL PNSTAWGSFI EFFMNSSEET AWNMTPWQNT LYNENEGGGH
EVLCVGYNDT DPTNRYWIMV NSWGVSDGHP RGVFRVSMDM DYSATMQFRD NDDWAALVWQ
TLDVNFAATP SPAPKEISSL PYTCSVPGEY YLAKDLISSD ADTGILVTAQ NVTIDGKGHL
LRGSGRQGSV GILAYNNGDP VDGLNITNLA ISNWEDGCYL YHATNGSVND TTISDCSYAG
IFLDGETTNL AIADNTLTSN YRGLLSRSTA DIRVEHNRIT ESLNTGLYLL SMNQSLIADN
QIVNGQNVII SGWVNTTSWN TSKTTGQNLA GGPYLGGNYW GNPTQTGFSD LAVDQNRDGF
ADSPNQIAAG TMDQFPLVAY ANPGPQPIPP NQLDPTDPDH DRLYEDLNGN GKLDFGDVTT
FFNQMDWIAD HEPVQLFDFN GNQQIDFGDV AALFSRL
|
|---|
| |