Gene Mpal_0907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpal_0907 
Symbol 
ID7272400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosphaerula palustris E1-9c 
KingdomArchaea 
Replicon accessionNC_011832 
Strand
Start bp932683 
End bp935220 
Gene Length2538 bp 
Protein Length845 aa 
Translation table11 
GC content58% 
IMG OID643569548 
ProductCarbohydrate binding family 6 
Protein accessionYP_002465984 
Protein GI219851552 
COG category[R] General function prediction only 
COG ID[COG3291] FOG: PKD repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00955406 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.403954 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTGA TACACAGAAG GATGACATGG CCGCTTCTTA TGCTGGCCAT CATCTCATGC 
CTGTTGATGA TCGCACCGGC ATCGGCTGAA TCCTTTCATC TGACCGGAAC CCTGATCAAT
GGATCCATCA ATGGGAACAC CAATCAGCCA ATAGCAAATA CGAATGTCAC ATTCCAGATA
AATTCACCTT TTTTTCAAGG GACTATCAAT GGGACAACAG AGACAGATAA TCTCGGAAAC
TTCGATCTCT CCTTTGACCC GGGAATTGGT ATACCCCCTT TCATTTCGAT CACGTGCTCT
GCCACAACGA TTGGATATTC TGTATACCAG TCCCAGGCTC CAATCATAGT GATGGTAGGT
TACGCTAATA TTGGCTCCAT CTATCTCACC CCACTACCAG TTCCGATAAC TCTGACGGGA
ACTGTTGTTG ATAAATTCTC CGGTCTACCA GTGCCTAATA TGCAAATTGA CTCCGGCAGC
GCCTCGGACA CCTCCAAACA GGACGGGAGT TTCACCCTCT TTGAAGCTCC GGAGACAGGA
GGTTCCATGG ACTTCGAGAT CTATGCAGAT AGATACTATG AAGGTCACCA GGACACATTA
TCTGTCTCTG AAGAAGAGAT CGCACGTGGA TCAAAGGACC TCGGAACCGT CACTATCACG
CCACATTATG GAGGTTACGT CACTGACAAA TCCACCGGTC AGCCTTTGTC CGGCGTCCAG
CTCACCATCA CCAACGATCC GTCATCGCAG GTTGGAAACG GGGGGACGGG AACATCTGAT
GAAACGGGAT ATTACCGGAT AAGACTGCCC GCGAAGGGCA TCTCTTCGAA CAATAGCCTG
CGTGATACTG GTGCTGACAA TTCTGTTCGG TATCTGGTTG CAGTCAAGGA TGGATATCAG
CTCTATTCCG CCAATGTCAC GATACGGGAT GAAGAGGCCC CCTTTAACGT CGCGCTCTCC
CCGAGCTTTG CAGCGAACTT CCTCGCACTC GGCCATGTGG GCCAGGCCCC GTACTCTGTC
CGATTCATGG ACCAGTCGAC CGGCTCGCCG ACCGCCTGGA AGTGGGACTT CGGCGACGGC
ACCACCTCGA CCGAGCAGAA CCCGACCCAT ATCTACAACC AGACCGGTGT CTACAACGTG
GCGTTGACGG CATCGAACGA TAAGACGAGC GACACCTGCA CCCAGTACCG GTGTATCATT
GTGAACGCCG TACCAGTGGC GAACTTCACC GCGAACGTGA CCGCCGGGCA GACGCCCTTC
ACCGTGCAGT TCACCGACCA GTCCACCAGC GGTGCGGACG GGTTTCAGTG GCAGTTCGGC
GACGGGACCA CCTCGACCGA GCAGAACCCG GTCCACACCT ACACGAGCCC GGGATCGTAC
TCGGTGATGC TGACGGTATC AGTACCTGAC TACGGCAGTG TCTTCGCTCA GAAGACCGGG
TACATCTCGG TAAGCGGTCC GTCATCGGTC GGGTTCACGG CGAACGTCAC CGCCGGCCTC
TCCCCGCTCG CCGTGCAGTT CAATGAGTCG ACGAACGAAT CGGTCCAGTA TTCCTTCTGG
CATTTCGGGG ACGGGGCCAC CTCTGCAGAG AAGAGCCCGG TCCATGTCTA TGATGCAGCC
GGCAGTTATT CGGTCTCGCT GATGACCGTC GGGTCGAACG GCACCGAGGT GAAGACGGTC
GATAACTTCA TCAATGTCAG CGCACCGGTG ACCCCGACGG TCACGCCCAC AGCGACTGCC
ACGGCGACGG TGACCCCGAC GCCGACCGGA GCCCTGCCGG TGGCCAACTT CACGGTCACC
ACCGGAGCCC CGGGGTCGTC CGACATCACG GTCACCGACG CCTCGACGAA CGCGACTTCG
GTCCACTACA GCCTCGGTGA CGGTGCCACC ACCGCCTATC CGACCTTCCG GTACACCTAC
TGGCAGGCCG GAACCTATAC GATCGAACAG ACCGCAACCA ATGCGGTTGG GTCCTCGAAG
AAGAGCATCG TCGTAACCGT ACCGGTTGCG GCTCCAACAA CAACGGTGAC CCCGACGGTG
ACAGTCACAA CCACTGTCTC GCCGACGGTG ACGACGACCA GTCAGGCTTA CAACGGCCCG
CACACGATCC CCGGGAAACT GCAGGCTGAG GACTACGACC TCGGCGGTGA AGGGGTCGCC
TACTATGACA CGACCCCTGG GAATGAGGGC GGGGTCTACC GGCATGACGA TGTCGATATC
GAGCAGCTCG ATACCGACGG CTCGCCGAAC GTCGGCTGGA TCCGATCCGG TGAGTGGATG
GCCTACACGG TGAACGTCGC CAGCACCGGC ACCTACACCG CCGGGTTCAG GGTCGCCTCA
TCACACTCCG GTTCATCCAT CAAAGTCTAT GTCGACGACG GCACCACCCC GGTGGCGACC
GTGAACGTCC CGAACACCGG CGACTGGCCG TCCTTCCAGA CCGTCTCGGT GCCGGTGACG
CTGCCGGCAG GACAGCACCG GCTCAAATTC TCATTCCCGA CCGACTATGT GAACATCAAC
TGGGTCACCT TCGCCTGA
 
Protein sequence
MTLIHRRMTW PLLMLAIISC LLMIAPASAE SFHLTGTLIN GSINGNTNQP IANTNVTFQI 
NSPFFQGTIN GTTETDNLGN FDLSFDPGIG IPPFISITCS ATTIGYSVYQ SQAPIIVMVG
YANIGSIYLT PLPVPITLTG TVVDKFSGLP VPNMQIDSGS ASDTSKQDGS FTLFEAPETG
GSMDFEIYAD RYYEGHQDTL SVSEEEIARG SKDLGTVTIT PHYGGYVTDK STGQPLSGVQ
LTITNDPSSQ VGNGGTGTSD ETGYYRIRLP AKGISSNNSL RDTGADNSVR YLVAVKDGYQ
LYSANVTIRD EEAPFNVALS PSFAANFLAL GHVGQAPYSV RFMDQSTGSP TAWKWDFGDG
TTSTEQNPTH IYNQTGVYNV ALTASNDKTS DTCTQYRCII VNAVPVANFT ANVTAGQTPF
TVQFTDQSTS GADGFQWQFG DGTTSTEQNP VHTYTSPGSY SVMLTVSVPD YGSVFAQKTG
YISVSGPSSV GFTANVTAGL SPLAVQFNES TNESVQYSFW HFGDGATSAE KSPVHVYDAA
GSYSVSLMTV GSNGTEVKTV DNFINVSAPV TPTVTPTATA TATVTPTPTG ALPVANFTVT
TGAPGSSDIT VTDASTNATS VHYSLGDGAT TAYPTFRYTY WQAGTYTIEQ TATNAVGSSK
KSIVVTVPVA APTTTVTPTV TVTTTVSPTV TTTSQAYNGP HTIPGKLQAE DYDLGGEGVA
YYDTTPGNEG GVYRHDDVDI EQLDTDGSPN VGWIRSGEWM AYTVNVASTG TYTAGFRVAS
SHSGSSIKVY VDDGTTPVAT VNVPNTGDWP SFQTVSVPVT LPAGQHRLKF SFPTDYVNIN
WVTFA