| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0622 |
|---|
| Symbol | |
|---|
| ID | 7270209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 609233 |
|---|
| End bp | 610555 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643569270 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_002465716 |
|---|
| Protein GI | 219851284 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCTG TTCTCTATGT TGATGATGAG CGATCACTCC TGGACATTGG AAAGTTGTTC
CTTGAAAAGA GGGGGGATAT GCAGGTGGAG ACACTCACCT CTGCAACTGA GGCGCTGCAG
GTGATCAGAG AGCATCCCTT TGATGCGATC ATATCAGACT ATCAGATGCC TGATATGGAT
GGCCTCTCCT TTCTCAAAGA ACTACGAAAA CAGGATAAAC AGGTTCCGTT CGTCCTCTTC
ACCGGCCGGG GACGGGAGGA GGTGGTGATC GAGGCACTGA ACTGCGGAGC GGACTTCTAT
CTTCAGAAAG GAGGGAATGC TACCCCGCAG TTCGCAGAAC TGCGTAATAT GCTCCAGACT
GCGATCACCC GACGAAAGGA TAATGAGAAG ATCACCCGGT ACAATCGTGC TCTCAGAATG
ATTCTGGCCT GCAACCAGAT CATCGTCCGA ACCACCGATG AACAGGAACT GTTGCACCAG
ATCTGCGAGA CCCTGGTAAA CCTCGGAGGA TACCGGTTCT CATGGGTCGG TTCCGTCGAA
GGTGACGAGA AGATCATACA CCCCCTGGCT TACGCCGGAT TTGAGGACGG ATACCTCTCA
GCCGGGACCA TCTCCTGGCG GGAGACTGCC GATGGTGATG GGCATACCAG AACAGCGATC
AGGACCAGAA CCCCGGCTGT AGCCAGAAAC CTTCAGACCA ACTTCAATGC GGCCTGGCGA
AAAGAAGCTG CTGCCCGGGG ATATGCCTCC TCAATAGCGA TCCCAATGAT CGATGACGAA
TTCGTCTGGG GGGTTCTGAA GGTCTATGCG ATCGAGACCG ATGCATTCGA CCCAGAAGAG
GTGGACCTCC TGACGGGTTT GGCACGGGAT ATGGCACATG GGATCTTCTC CCTCAGAACA
GAGAGAGAGC GCAGAACAAC ACGGAAAGCC CTGGAGATCA GTGAGGCCCG GTACCGGGCG
ATCATCGAAG ATCAGACCGA CATGGTCGCA AGGTTCACCC CGGACGGTCT CCTGACTTTT
GTGAACACCT CGTTCATCAC GTCCTGCAAC AGGTTCCGGG AGGACCTGAT CGGTGCGGAC
CTCTATCACC TGCTCGCCCC TGAGGAGCGG GAGACAGTCA GATCCAGGAT TATAGCCCTG
ACAGCAGATG AACCGCTCAT CGCCCTCGAA GCTCATCTCC CGACTCCGCA AGGCATCAAA
GCAGTCCACT GGGTCTGCAG AGCGATCACC GACCGGAACC GGACTGTGGT TGAGTTTCAG
ATTGTGGGCA GGGAGATCGA CAACAATCTC ACCAGGTCAC CAGAGAATCC CAGTGCAAAT
TGA
|
|---|
| Protein sequence | MISVLYVDDE RSLLDIGKLF LEKRGDMQVE TLTSATEALQ VIREHPFDAI ISDYQMPDMD
GLSFLKELRK QDKQVPFVLF TGRGREEVVI EALNCGADFY LQKGGNATPQ FAELRNMLQT
AITRRKDNEK ITRYNRALRM ILACNQIIVR TTDEQELLHQ ICETLVNLGG YRFSWVGSVE
GDEKIIHPLA YAGFEDGYLS AGTISWRETA DGDGHTRTAI RTRTPAVARN LQTNFNAAWR
KEAAARGYAS SIAIPMIDDE FVWGVLKVYA IETDAFDPEE VDLLTGLARD MAHGIFSLRT
ERERRTTRKA LEISEARYRA IIEDQTDMVA RFTPDGLLTF VNTSFITSCN RFREDLIGAD
LYHLLAPEER ETVRSRIIAL TADEPLIALE AHLPTPQGIK AVHWVCRAIT DRNRTVVEFQ
IVGREIDNNL TRSPENPSAN
|
|---|
| |