| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0546 |
|---|
| Symbol | |
|---|
| ID | 7271962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 541479 |
|---|
| End bp | 542708 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643569193 |
|---|
| Product | putative pseudouridylate synthase |
|---|
| Protein accession | YP_002465642 |
|---|
| Protein GI | 219851210 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1258] Predicted pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR01213] conserved hypothetical protein TIGR01213 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0278451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.36794 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAC AGGTGAAGGC GATCCTAGGA TATGGCGAGA TCTGTGACCA CTGCCTTGGA
CGGTTCTATG GAAAACTGTC CTTTGGGCTG ACCAATCAGG AACGGGGGCA TGCCCTCCGG
GTGGCGGCGG CGCTCGACGC CAATGAACCG TACCACCCGG CAGCAGGGGT TTGCTGGGTC
TGCAACAATC TCTTCGACCA GGTCGGTCTC TGGGCTGAGA AAGTTTGTAC TGCCCTCGAG
GGGCTCGAGT ATTCGACGAT TCTGGTCGGG ACCCGGGTTC CACCGTTGCT GACCGAGAGC
GAGGAGATGG TCTGGTCAGA TCAGAATCTC CGCTCACCCG AACCACTCAA GTCTGAGATG
AACCGGGAGG TTGGCAAGGC GGTCTCTGCT AAGACCGGCC GCATGGTCGA CTTCAAGCAC
CCAGATGTGG TTGTGATCCT GGATATAGCC GGTGATCAGG TCGAAGTGCA GGTGAACCCG
ATCTTCATCT ATGGCAGGTA CCAGAAGTTT GAACGGGGGA TCCCGCAGAC CCATTGGGAC
TGCCGGGCCT GTCATGGCAG TGGCTGTGAA GCCTGTAACT TCACCGGCAA GCAGTATGCC
GACTCGGTCG AGGAATTGGT CGGCAGGCCG GTTATGGTCC TGCTGAAGGC CACTGGTGCC
GTTCTGCATG GTGCAGGGAG GGAGGATATC GATGCCCGGA TGATCGGCAC AGGAAGGCCG
TTCATCCTTG AAGTGGACAC GCCTCAGATC CGGTCGGCTG ACCTCAAAGA ACTTGAACTG
GCCGTCAACA CCGCTGCAGC AGGCAGGGTT GCTGTAGAGT TCGACCGGTG GGCGCTGCGG
ACCGAGGTGG AAACCCTTAA GTCCAACAAA GCGCATAAAA AATACAGGAT CCTGGTAGAG
GTCGAAGGCG ATCTGTCAGA GGATGAGCTG AATCTGGCTC TGAATCGCCT GCAGGGGGTC
ACAATACATC AGCGCACACC CCGCCGGGTT GCCCATAGAC GGGCAGACAA GATCAGGGAG
CGTGATGTCC TTGAGATCAG GTGTCTTGGT ATCGAAGAAG GCAGGTATTC AATCGAGGTT
CTCGGTGAAG CCGGCCTTTA TATCAAGGAA CTGATCTCAG GGGATGATGG CAGGACACGC
CCCAGTCTTA CGGAGATCCT TGGAAGACCT GCTCAGGTGA CCAGCCTTGA TGTAGTGCTG
GTCGAAGAAA TGGCAAATGG AGGAGAGTAA
|
|---|
| Protein sequence | MIEQVKAILG YGEICDHCLG RFYGKLSFGL TNQERGHALR VAAALDANEP YHPAAGVCWV
CNNLFDQVGL WAEKVCTALE GLEYSTILVG TRVPPLLTES EEMVWSDQNL RSPEPLKSEM
NREVGKAVSA KTGRMVDFKH PDVVVILDIA GDQVEVQVNP IFIYGRYQKF ERGIPQTHWD
CRACHGSGCE ACNFTGKQYA DSVEELVGRP VMVLLKATGA VLHGAGREDI DARMIGTGRP
FILEVDTPQI RSADLKELEL AVNTAAAGRV AVEFDRWALR TEVETLKSNK AHKKYRILVE
VEGDLSEDEL NLALNRLQGV TIHQRTPRRV AHRRADKIRE RDVLEIRCLG IEEGRYSIEV
LGEAGLYIKE LISGDDGRTR PSLTEILGRP AQVTSLDVVL VEEMANGGE
|
|---|
| |