| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0540 |
|---|
| Symbol | |
|---|
| ID | 7271956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 537030 |
|---|
| End bp | 537695 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643569187 |
|---|
| Product | translation initiation factor IF-6 |
|---|
| Protein accession | YP_002465636 |
|---|
| Protein GI | 219851204 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1976] Translation initiation factor 6 (eIF-6) |
|---|
| TIGRFAM ID | [TIGR00323] translation initiation factor eIF-6, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000169194 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.901506 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACGGA CGCTCGCATA CGAAGGCGAC CCCCATATTG GTATCTTTAC GCGAGTGCTT
GAGGATATCG CAGTGGTCCC ACCCGAGGCC TCTGCTGACT ATTGCGCCGC CCTTAAAGAG
GCGCTCGGTG TAACTCTGGT GAAGACGCAT GTCCAGGGGA GTTCCATCAT CGGTTCACTG
GTCAGTGGAA ACAGCCGGGG GGCTATCGTC AGTGGGCTTG CTTACCCTGA TGAGATCAGG
GCGATCGAGG AGTACCGTGA GGTGATGCTC CTCGAGGGAT CGATGAATGC GGCAGGTAAT
GTGATCCTTG CCAATGATCA GATGGCGGCT GTCCATCCTG ATATGGATAA TGCCACAATC
GAGCAGATCC ATTCGGTGCT GGGCGTGCCG GTGATCAGGC TGACACTGAG TGGGATCAAG
ACGGTCGGAA TGGCCGGGTA TGCGACGAAC CGTGGAATTC TTGTCCATGC ACGGAGTGCT
GGCAGGGAAC TGGCAACTCT TGAGTCAACC ACCGATCTTC CGGTTGGGAC AGGAACGATC
AATATGGGGA GCGGCCTTGT CGGTACAGGG TTGCTCGCAA ACAGCACGGG CTATCTCGCA
GGCATCGAGA CGAGCGGTTT CGAGATGGGC CGTATCGCAG ATGTATTTGG ATTTGTTGAG
GGATAA
|
|---|
| Protein sequence | MIRTLAYEGD PHIGIFTRVL EDIAVVPPEA SADYCAALKE ALGVTLVKTH VQGSSIIGSL
VSGNSRGAIV SGLAYPDEIR AIEEYREVML LEGSMNAAGN VILANDQMAA VHPDMDNATI
EQIHSVLGVP VIRLTLSGIK TVGMAGYATN RGILVHARSA GRELATLEST TDLPVGTGTI
NMGSGLVGTG LLANSTGYLA GIETSGFEMG RIADVFGFVE G
|
|---|
| |