| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0458 |
|---|
| Symbol | rpl6p |
|---|
| ID | 7272782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 467061 |
|---|
| End bp | 467591 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643569104 |
|---|
| Product | 50S ribosomal protein L6P |
|---|
| Protein accession | YP_002465555 |
|---|
| Protein GI | 219851123 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0097] Ribosomal protein L6P/L9E |
|---|
| TIGRFAM ID | [TIGR03653] archaeal ribosomal protein L6P |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0268307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATGG AGAAGACCGT TACCATCCCA GAAGGAGTCC AGGTGCAGAT GGAGGGAACC
CTCCTGACGA TCACTGGACC CAAGGGGACA CTGCAGCGCG ACGTCAGGTA TCCACAGGTC
TCTGTCACCG TTGACGCAGA CACAGAAACA ATCGTGGTCA GGACCGATGC AAGCAGAAAG
CAGATCGTCG CAATGGTTGG GACGCTTGCT GCTCATATCC GAAATATGTG CAAAGGGGTG
ACTGAAGGGT TTGAATACAG TATGAAGGTC GTATTCGCCC ATTTCCCGAT CCAGTTGAAG
TTGCAGGGCA ATATGCTTGT GATCGAAAAC TTCCTCGGCG AAAAGCAGTC GCGAAAAGCA
CGTATTGAAG AAGGTGTCAC TGCCAAGGTC AGCAATGATG AGATCATCCT GACCGGGATC
AACAAGGAGT CGGTAGGGAA TTCAGCTGCA CATATTGAGC ACGCGACCAA GATCAGAAAT
AGAGATCCCC GTGTGTTCCA GGATGGCATC TATATTGTGG GGAAGGCGTG A
|
|---|
| Protein sequence | MTMEKTVTIP EGVQVQMEGT LLTITGPKGT LQRDVRYPQV SVTVDADTET IVVRTDASRK
QIVAMVGTLA AHIRNMCKGV TEGFEYSMKV VFAHFPIQLK LQGNMLVIEN FLGEKQSRKA
RIEEGVTAKV SNDEIILTGI NKESVGNSAA HIEHATKIRN RDPRVFQDGI YIVGKA
|
|---|
| |