| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0454 |
|---|
| Symbol | |
|---|
| ID | 7272778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 465249 |
|---|
| End bp | 465974 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643569100 |
|---|
| Product | 30S ribosomal protein S4e |
|---|
| Protein accession | YP_002465551 |
|---|
| Protein GI | 219851119 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1471] Ribosomal protein S4E |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0061334 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAC ATCTGAAGAG ACTTGTCGCA CCCCGTGCGT GGCATATCGC AAAGAAGACG
AATACATTCA TCTCAAAGAC CGCTCCCGGT CCCCACAATG GGCAGGCACT CCCGATTGGA
GTCTGGCTTC GTGACACCAT GGGATTTGCC CAGACCTTAA AAGAGGTCAA GCAGATCTTA
AACGAGCGCT CTGTCATTGT CAATGGCAGG CCATGCAGGG ATCCAAAGAT GGGGATCGGT
ATCTTCGATA TCATTGCGAT CCCAAAGATG GGAAAATATT ACCGGATTCT GCTCGCCAAG
AACGGCAGAC TGGTCGCAAT TTCGATCGAG GCAGAGGACG CGAAGAGCCG GCTCTGCAAG
GTTCAGGACA AGACGATTGT CTCTGGTGGA AAAACTCAGG TGAACCTGAC CTACGGTGCC
AATGTACTGA CAGAAGAGGC ATGTTCACCG AAGGACTCAC TGGTTCTTTC ACTTGAGCCG
GAACAGCGGT TTACAGTCCT CGACCACTTC CCCTACAAGG AGGGAAATAT GGCGATGGTG
ATCGGTGGTC GGCACTCCGG TAAGATCGGG AAGATTCAGA CGATCACGAC AGTGATGGGG
TCAACCCCGA ACACGGTCAT TCTCGAAGAG GTTGGGACTG GAACCCAGTT CGATACGATC
GACTCGTATA TCTATATGGT TGGACGTGAG ACGCCGGTGA TCGCTGAATG GGGGATTGAA
GAGTGA
|
|---|
| Protein sequence | MSEHLKRLVA PRAWHIAKKT NTFISKTAPG PHNGQALPIG VWLRDTMGFA QTLKEVKQIL
NERSVIVNGR PCRDPKMGIG IFDIIAIPKM GKYYRILLAK NGRLVAISIE AEDAKSRLCK
VQDKTIVSGG KTQVNLTYGA NVLTEEACSP KDSLVLSLEP EQRFTVLDHF PYKEGNMAMV
IGGRHSGKIG KIQTITTVMG STPNTVILEE VGTGTQFDTI DSYIYMVGRE TPVIAEWGIE
E
|
|---|
| |