| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0405 |
|---|
| Symbol | |
|---|
| ID | 7271431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 421892 |
|---|
| End bp | 424141 |
|---|
| Gene Length | 2250 bp |
|---|
| Protein Length | 749 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643569050 |
|---|
| Product | Carbohydrate binding family 6 |
|---|
| Protein accession | YP_002465502 |
|---|
| Protein GI | 219851070 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3420] Nitrous oxidase accessory protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.85643 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTATCGT CTCTCCGTGT CCTCTCTCTG CTCAGTTTGA CGGCTCTTCT GGTGCTCTTC
CTCTCGTCCA TACCCGGGCC GGCCGAGGCT ACGGTCAAGA TCGTGCCCCT TGGAGACTCA
ATCACCAAGG GGTCCACCCA GACCGCTGAT GAGGCTCAGT ACCCGACCTA TCGGTACTGG
CTCTGGCATT CGCTGCAGGA CAACGGGTAT GACGTGGACT TTGTCGGGAG CTGGGACCAG
CCCCGGTTCC AGGACTTCTC GTTCGACCAG GACAATGAAG GGCATGGGGG GTACACCACC
GACGGGATCC TGAACGGCGC CTCCGACGAC CCCTGGCAGG GACACCTCTC CGGGTGGCTC
GGGTCCTACT CTCCTGATAT CGCGCTGGTG GAACTCGGGA CCAACGACGT CCTTCACCAG
GTACCAGCCG ATCAGAGCAT TCGAAACCTG GAGGCGATCA TCGACACCCT CCGGGACCGG
AACCCGCACG TGAAGATCCT GGTCGGGACG GTGATCCCCA CGTCGATCTA CCGTGAGAAC
CTGATCGCCC TGAACCAGAG GATCCCGGAG GTGGCGGCCG ACAAGAGCAC CACCGCTTCC
CCGGTCAAGA TCGTTGATCT CTACTCGGGG TACGACGGCC TGGCCGACAA CCAGCTGCCG
CTCGGTGTCC ATCCGAACCT GCAGGGGGAG AAGAAGATTG CAGCGAAATG GTATAATGCG
CTGGTTCCGC TGCTCGATTC GTCGACACCC ACGCCGACAC CAACGTCGAC TCCAACATCG
ACCCCGAAAC CCACACCGAC CCAGGACTCG CACCTGATCA CGGGACCGGT GAAGATCACG
GTACCGGGGA CGTACACCCT GGCGAACGAC ATCACCGGCT CTTCGAGCCA GGTCGGGATC
GAGATTGCGA GTTCTAACGT GGTGCTCGAA GGGAACGAGC ACACGATCAG TGGAACCGGT
CAGGACGGGT CCTGTGGGGT CTTTGTCTCC TCCAGTGACA CCCCGATCAG CGGGGTGGTG
ATCCGGAACC TGAAGGTCTC GAACTGGGGC TATGGGATCT ATTACTACCA GGGTGTCACG
GGCGGGACGG TGACCGGGTG TGAGGTCACG GGGAACTCGT TTGCCGGGGT GGTCCTGTAC
TCGGGTGGTG ATAGGACCAC GATCCGGGGG AACACGATCA CCCGGAACAT CCGCGGGGTC
TACCTGGCGA ATGTCGATGG GGCCGGCGTG GTCGATAATA TGCTTAAAAA TCAGAATAAT
GCCGTCTTTG CGGGCACTGT CACCAGCACC GTCTGGGCGC TTCCGGTACA GGCCGGGACC
AACATCGCCG GCGGACCCTC GCTCGGCGGT AATTACTGGG GGTCGACCGC CGGGACCGGG
TTCTCTGATA CCGCATCGGA CGCCGACCAC GATGGTTTCT CTGACCAGCA GTACACCGTC
TGGGGCGGCA ACGTCGACCC GCTGCCGCTG GTCACGTACG TGCCCCCCAC GCCAACGCCG
TCCCCGACGC CGACCCCAAC CTTCACACCC GGGCCGTTCA CCAGCCTGAC CGTTCCGGGC
ACCCTGCAGG CGGAGCAGTA CGACAACGGC GGCGAGGGTA CGGCCTACCA TGACACCACC
CCGGGCAATC AGGGCGGGGA GTACCGGCAG GACGACGTGG ACATCGAGTC CGGTGCCAGC
GGGTATGACC TCTGCTTTAT CCGGACCGGG GAGTGGGTGA ACTATACGAT GCAGGTTGCC
ACTGCCGGCG ACTACACGGC CGCCTTCCGG GCGGCGAGTT GGGGCGATGA CCACACGATC
ACCCTCTCGA TCGACGGCAC CGTGGCCGGC ACGGTCGTGC TCGCCGACAC TGGTTCGTCT
GAGGTGTATG CCGACACCGC CATCCCGGTC TCCCTACCGT CCGGCACCCA CACACTGACA
CTTGAGTTCA CCGGCGACGG TGAGAACCTG GATTATGTCG TCTTCACCGC GGTGCCGGTC
TCAACACCAA CGTTGACCCC CACACCGACC GGGAATCAGA CCGGTACGCT GCAGCCGATC
CCTCCGTCGA CGCTGGTACC GACCGATCCC AATAACGACG GACAGTACGA GGACCTGAAC
GGGGATGGAC TGGTCGACTT CTCTGATGTG GTGATCTTCT TCAACCAGAT GGACTGGATC
GCTGAGAACG AGCCGGTGGC GGCCTTTGAC TTCAACCAGA ACGGACAGAT CGACTTCAAT
GATGTGGTCA TTCTCTTTGA GAGGCTCTGA
|
|---|
| Protein sequence | MVSSLRVLSL LSLTALLVLF LSSIPGPAEA TVKIVPLGDS ITKGSTQTAD EAQYPTYRYW
LWHSLQDNGY DVDFVGSWDQ PRFQDFSFDQ DNEGHGGYTT DGILNGASDD PWQGHLSGWL
GSYSPDIALV ELGTNDVLHQ VPADQSIRNL EAIIDTLRDR NPHVKILVGT VIPTSIYREN
LIALNQRIPE VAADKSTTAS PVKIVDLYSG YDGLADNQLP LGVHPNLQGE KKIAAKWYNA
LVPLLDSSTP TPTPTSTPTS TPKPTPTQDS HLITGPVKIT VPGTYTLAND ITGSSSQVGI
EIASSNVVLE GNEHTISGTG QDGSCGVFVS SSDTPISGVV IRNLKVSNWG YGIYYYQGVT
GGTVTGCEVT GNSFAGVVLY SGGDRTTIRG NTITRNIRGV YLANVDGAGV VDNMLKNQNN
AVFAGTVTST VWALPVQAGT NIAGGPSLGG NYWGSTAGTG FSDTASDADH DGFSDQQYTV
WGGNVDPLPL VTYVPPTPTP SPTPTPTFTP GPFTSLTVPG TLQAEQYDNG GEGTAYHDTT
PGNQGGEYRQ DDVDIESGAS GYDLCFIRTG EWVNYTMQVA TAGDYTAAFR AASWGDDHTI
TLSIDGTVAG TVVLADTGSS EVYADTAIPV SLPSGTHTLT LEFTGDGENL DYVVFTAVPV
STPTLTPTPT GNQTGTLQPI PPSTLVPTDP NNDGQYEDLN GDGLVDFSDV VIFFNQMDWI
AENEPVAAFD FNQNGQIDFN DVVILFERL
|
|---|
| |