| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0392 |
|---|
| Symbol | |
|---|
| ID | 7271418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 409697 |
|---|
| End bp | 410665 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643569038 |
|---|
| Product | Protein of unknown function DUF1616 |
|---|
| Protein accession | YP_002465490 |
|---|
| Protein GI | 219851058 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4743] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00405742 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCAC ACCAGAGCCT CCGTGAGGGG CTGATACAGA CCATCAGACC GCCGGCCGAT
CTGATCGCAG CTCTCGTCTG GACGGCACTC GCCCTGATCG CAGTCTACCT TCCAATCGTG
AATCAGAGCC CACTCAGGAT TCTCTTTGGA TTGCCTCTCG TTCTCTTCGT CCCAGGGTAC
GTGCTCATCG CCGCACTCTT CCCCCGTTCA GACGACCTGG ACTGGATCGA ACGGATCGCC
CTCTCATTCG GTCTCTCGAT CGCAGTCGTC CCCCTGATCG GGCTTGGACT CAACTACACC
CCCTGGGGTA TCCGGCTGGA CCCGATGCTG GTCTCCCTCT CCCTCTTCAC GCTGGCGATG
GCGGTCGCGG CCACCATACG TCGCCTCTCC CTCCCTGTAG AGGAGCAGTT AACGATCCCG
GCAGCAGCGG TGGTGACCGG GATCAGGGCC GAACTCTTCG AGGCCGGCCA GAGTAAGGTC
GACCGGGCCC TCTCGATCAT CATGCTCATC TCGATCCTGA CCGCGATCGG AACGACCGTC
TACGTGATCG CCGTTCCCAA GGAGGGCGAA CACTTCTCCG AGTTCTATAT CCTCGGTGCC
GAAGGAAAGG CCGCAGACTA TCCAACCTCA TTCGCACTCA ACACCCCCCA GTGGGTCACC
GTCGGGGTGG GCAACCACGA GTATCGGAAC GTGACCTACA CTGTCGAGGC TCAGGCCGTC
AACCAGTCGT TCGACCCGGC CACCAACACC TCGACGATCG ACCGGATGCA GGTACTCAAC
CGCTACCAGG TCACGCTCGC CCAGAACACC ACCGACGAGC AGAAACTGAC CTTCACGGTC
CCCAAACCCG GGTATAACGA AATCCAGTTC CTCCTCTTCA ATGAGACGGT CCCCAACGAT
TCAGTGACCG GGCAGGAGCG GATCGACCGG AGCGACCGCG ACCTGCACCT CTGGATCAAG
ACCAGATGA
|
|---|
| Protein sequence | MPPHQSLREG LIQTIRPPAD LIAALVWTAL ALIAVYLPIV NQSPLRILFG LPLVLFVPGY
VLIAALFPRS DDLDWIERIA LSFGLSIAVV PLIGLGLNYT PWGIRLDPML VSLSLFTLAM
AVAATIRRLS LPVEEQLTIP AAAVVTGIRA ELFEAGQSKV DRALSIIMLI SILTAIGTTV
YVIAVPKEGE HFSEFYILGA EGKAADYPTS FALNTPQWVT VGVGNHEYRN VTYTVEAQAV
NQSFDPATNT STIDRMQVLN RYQVTLAQNT TDEQKLTFTV PKPGYNEIQF LLFNETVPND
SVTGQERIDR SDRDLHLWIK TR
|
|---|
| |