| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0347 |
|---|
| Symbol | |
|---|
| ID | 7272652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 370342 |
|---|
| End bp | 371451 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643569000 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_002465452 |
|---|
| Protein GI | 219851020 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.34177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.395764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACT TTCATGAATT TTTCCAGGAG AAGACGATCC TCGTCACCGG CGGGGCCGGC
GCGATCGGCG GGAACCTCGT GCGGCGACTG AACAACCTCG GGGCGAAGAA GATCCTGATC
CTCGACAGCC TCTCGTCCTC CTATGAATGG AACATGGAGG CTGGGGATCG GATTCAGTTC
ATCAAGGGGG ATATCCTCGA CGAGGAGAAA CTGCGGTGGA CGTTCAAGCA GAAGCCTGAC
ATCGTCTACC ACCTCGCGGC CCACTTCGCG AATCAGAACT CGGTCGACAA CCCCGAGACC
GATCTGATGG TCAACGGCAT CGGGATCCTG AAGGTTCTTC AGTACGCCCA GATGGTCGGC
GTCGAGCGGT TCGTCTACTC ATCGTCGGGC TGCGGGGTCT ACGGCCTCGA GTCAAAGATG
CCGTTTAAAG AGGACGACGT CTCGATCCAC CTCCACACCC CCTACCAGGT TACGAAACTG
CTCGGGGAGC TGTACACCAA TTACTTCCAC AACATGTACG ACCTCCCGAT CGTGAACGCC
CGGTTCTTCA ACTCCTACGG TCCGGGGGAG GTGCCTGGCC GGTACCGGAA TGTGATCCCG
AACTTTTTCT ACTGGGCGAT GAAGGGGCTG CCCCTGCCGA TCACCGGCGA AGGGACCGAG
ACCCGCGACT GGACCTACGT CGGTGATATC GTGAACGGCC TGTTACTGAT GGCCTACCGG
GACGAGGCCA TCGGCGAGGC GTTCAACCTC GGCAACGGGG AGGAGCAGCG GGTGATCGAT
ATGGCAAATA CGGTGAACGC CCTGACCGGG AATGAGGCAG GGATCACGTT CACCCCGCGG
AGGGACTGGG ACGTGAAGAC GCGGCTCCTC TCCTGTATCG ATAAGTCACG AGTTGTCCTT
GGGTACGAAC CGCAGACGAC GTTCTCGAAG GGTCTGGAGA ATACGTACGA GTGGTTTGTC
GAGAACTGGG AGAGCATCGA TACGCACGCG GAGTTCCCCA GAGTTCGTAG AGATGTAAAG
AATGAACAGG ATCAGGGTGT TCTCACCAAA CCCCCGAATT GCGTCAGGTA TCCGAATTCT
GATGGAGATT CGTCTCCCTC AACCATATAA
|
|---|
| Protein sequence | MTDFHEFFQE KTILVTGGAG AIGGNLVRRL NNLGAKKILI LDSLSSSYEW NMEAGDRIQF
IKGDILDEEK LRWTFKQKPD IVYHLAAHFA NQNSVDNPET DLMVNGIGIL KVLQYAQMVG
VERFVYSSSG CGVYGLESKM PFKEDDVSIH LHTPYQVTKL LGELYTNYFH NMYDLPIVNA
RFFNSYGPGE VPGRYRNVIP NFFYWAMKGL PLPITGEGTE TRDWTYVGDI VNGLLLMAYR
DEAIGEAFNL GNGEEQRVID MANTVNALTG NEAGITFTPR RDWDVKTRLL SCIDKSRVVL
GYEPQTTFSK GLENTYEWFV ENWESIDTHA EFPRVRRDVK NEQDQGVLTK PPNCVRYPNS
DGDSSPSTI
|
|---|
| |