| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0346 |
|---|
| Symbol | |
|---|
| ID | 7272651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 369397 |
|---|
| End bp | 370338 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643568999 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_002465451 |
|---|
| Protein GI | 219851019 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.185672 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.626445 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACTC ACAGCATTCT TGTTACTGGC GGCGCAGGCT TCATTGGCAC CAATCTTGTC
AACGAACTCG AGCGTCGGGG TCATGAGGTC GTCGCCCTCG ATCTTCTGAA CAACGATCGG
GAGCACTACA TCCGTGCGGA TTCGAAGAAT TACCGGCAAT TGGAGCGGGT CTTCGATCGT
TCAGCGTTTG ATTATGTTTA TCATCTCGCC GCGGAGTACG GCCGCTGGAA TGGCGAGGAC
TACTATGAGA ACCTCTGGCA GACCAACGTG ATCGGTACCA AGCATATGCT CCGCCTTCAG
GAGAAGCTGA AGTTCCGGAT GATCTTCTTC TCCAGCGCCG AAGTCTACGG CGATTATAAT
GGCATCATGT CCGAGGATGT GATGATGGAT AATCCCATCA AGGATACCTA CCAGATGAAC
GATTACGCCA TCACCAAGTG GGCAGGTGAA CTGATGTGCA TGAACTCGGC CACGATGTTC
GGTACCGAGA CGGTCCGGGT CCGGCCGGTG AACTGCTATG GGCCGCATGA GCACTATACC
CCTTACCGCG GCTTCATCCC GAAGTTCATC TACCACGCCC TCTTCAACAA ACCCTATACC
GTCTACAAAG GGCACAAACG GATCATCGAC TTCGTCGAGG ACTCCTGCAG GACCTGGGCG
AACATCGTCG ACAACTTCAT TCCTGGAGAG GTCTACAACG TCGGCGGCCG GCCTGAGTGG
GAGCGGGATA TCAAGGAGTA CTCTGATATT ATTCTCAACG CCGTCGGCAG GGACGACTCG
CTGGTCACCT ACGAAGAGGC CGAGCCGTTC ACCACAAAGG TAAAGACGAT GGACTTCACA
AAGGCGGTCC GTGACCTCAA GCACGACCCT AACGTTTCAC CGGAAGAGGG GATCCAGAGG
ACGGTCGAGT GGATGAAGAA ATATTACCGG ATCGAGGAGT AG
|
|---|
| Protein sequence | METHSILVTG GAGFIGTNLV NELERRGHEV VALDLLNNDR EHYIRADSKN YRQLERVFDR
SAFDYVYHLA AEYGRWNGED YYENLWQTNV IGTKHMLRLQ EKLKFRMIFF SSAEVYGDYN
GIMSEDVMMD NPIKDTYQMN DYAITKWAGE LMCMNSATMF GTETVRVRPV NCYGPHEHYT
PYRGFIPKFI YHALFNKPYT VYKGHKRIID FVEDSCRTWA NIVDNFIPGE VYNVGGRPEW
ERDIKEYSDI ILNAVGRDDS LVTYEEAEPF TTKVKTMDFT KAVRDLKHDP NVSPEEGIQR
TVEWMKKYYR IEE
|
|---|
| |