| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0137 |
|---|
| Symbol | |
|---|
| ID | 7270907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 161572 |
|---|
| End bp | 163341 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643568795 |
|---|
| Product | thiamine pyrophosphate protein domain protein TPP-binding |
|---|
| Protein accession | YP_002465253 |
|---|
| Protein GI | 219850821 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG1773] Rubredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.114513 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGT GGCGATGCAG GATCTGTGGA TATATCTATG ACGAGAAGGA TGGAGAAGCA
AAGACCGGAA CCCCGGCAGG TACCCGCTTC ACTGACCTGC CCGAAGACTG GCGATGCCCG
ATCTGCAGGG CGGGAAAGGA TGCCTTTCTC CGGGTCCCGG ATGCTGACCC GCACAGTTCT
GCGACGACCA CCGTCGGCGA GGTGATCATC GACCACCTCG CTGCATCAGG GATCAGGTAC
GTCTTCGGGA TCCCGGGCAC CTCCTCGCTC GGCCTCGTCG ACGCGATCAG AAAGAAGGAG
GGGATCGAGT ACATCATCGT CAGGCACGAG GCGAACGGGG CGATGGCCGC AGCGGCCTAT
GGGAAGCTGA CCGGTCTGCC GGCCGTCTGT CTGACGATCG GCGGCCCCGG GGCGACCAAC
CTGGCGACCG GCCTCTATGA CGCGAAGGAG GATCACGCCC CCCTGATCGC ATTGAACGGG
CAGGTCGAGC ATCAGTATAC CGGGCCGGGC GGGTTCCAGG AGATCGATCA GGACGCCTTC
TTCCGGCCGA TCACCGTCTA CAACACCACG ATCCATGACC GTTCAAAGAC CGTCCAGATC
ATGACGACGG CACTAAAGAG TGCGATCCTC CAGCATGGGG TTGCCCAGGT CTCGGTCCCG
AACAACATCC AGAAGCAGCC TCTGGATGTC AGGTTCTGCA GCGGGCCGGG GTGTCTCATG
GACCTGAAGG TGATGCCCCA ACAAGATGAC CTGCAGCAGG CCGCCAGGGC GATCGATCAG
GCGAAAAGAC CGGTGATCAT CGCCGGGTTT GGAGCCTATC GGGATGGAGA AGCCGTAGCC
GAACTCGCGA AACGTCTCAA GGCCCCGATC CTGACCACGT TCCGGGCCAA GGGGATCCTT
CCGGAAGGGA CCGGGCAGGT GATCGGGATC CTCGGCAACG TCGGTTCGCC GGATGCACGA
ACCCTGGTGA ACGGTGCCGA CCTGCTGATC ACCCTCGGGG TCGGGTTCTC CTCGATGACG
AACGTCCCTC TGGATCGGCC GATCGTACAG GTGGATCGCG ACCCCCTGAA ACTCGGCAAG
AACAGCCAAA CTATCCCCCT GCTCGGGGAC TGTGCTCTCA TCATTGAGGA GCTCACGCGG
CTGGTTCGGG AGCGAGAAGA GACCGGGCAG ACCAGGGAGA TCAGGGCAAT GCAGCAGCGC
TGGACCGACC AGATCGATAG CGAAGCGGTG ATGCAGAGCC CGATTCCGGG CCCCACGATC
ATGAAGATCC TCTCCGGGGC AGTCCCGCAG GAGGCCGTCA TCTCGGTGGA CGTCGGGGAG
AACTGCTGGT GGTTTGGTCG AAACTTCCAG AGTCGCGGGC AGGTCTTCGT GATGTCGGGC
TACCTGGCCA CGATGGGGGC CGGCTTTCCC GGGGCGATCG CAGCCAGACT GGCCTATCCG
GACCGGCCGA CGGTCTGCAT CACCGGGGAC GGCGGGTTCG TGATGGCGAT GGGGGATCTG
GTGACGGCGG TGAAGTACCA CCTGCCGATG GTGATCGTCG TGATGAACAA TCGGCAGTAC
GGGATGATCC GGGTCGAGCA GATGATGGAG AACTACGAAA ACTACGGAAC CGACCTCGTC
AACCCGGACT TTGCCGCGTA TGCAGAGGCC TGCGGGGCTG TCGGGGTCAG GGTGGAGAAG
CCGGAGGACC TCGGTCCGGC GGTCACGGCC GGGCTCGCAT CAAAGGAGGT GGTGGTGATC
GATGTGGCCA CTGACCCGGG ACGGTTCTGA
|
|---|
| Protein sequence | MTAWRCRICG YIYDEKDGEA KTGTPAGTRF TDLPEDWRCP ICRAGKDAFL RVPDADPHSS
ATTTVGEVII DHLAASGIRY VFGIPGTSSL GLVDAIRKKE GIEYIIVRHE ANGAMAAAAY
GKLTGLPAVC LTIGGPGATN LATGLYDAKE DHAPLIALNG QVEHQYTGPG GFQEIDQDAF
FRPITVYNTT IHDRSKTVQI MTTALKSAIL QHGVAQVSVP NNIQKQPLDV RFCSGPGCLM
DLKVMPQQDD LQQAARAIDQ AKRPVIIAGF GAYRDGEAVA ELAKRLKAPI LTTFRAKGIL
PEGTGQVIGI LGNVGSPDAR TLVNGADLLI TLGVGFSSMT NVPLDRPIVQ VDRDPLKLGK
NSQTIPLLGD CALIIEELTR LVREREETGQ TREIRAMQQR WTDQIDSEAV MQSPIPGPTI
MKILSGAVPQ EAVISVDVGE NCWWFGRNFQ SRGQVFVMSG YLATMGAGFP GAIAARLAYP
DRPTVCITGD GGFVMAMGDL VTAVKYHLPM VIVVMNNRQY GMIRVEQMME NYENYGTDLV
NPDFAAYAEA CGAVGVRVEK PEDLGPAVTA GLASKEVVVI DVATDPGRF
|
|---|
| |