| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0100 |
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| Symbol | |
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| ID | 7272270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | - |
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| Start bp | 111410 |
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| End bp | 116413 |
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| Gene Length | 5004 bp |
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| Protein Length | 1667 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643568757 |
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| Product | PKD domain containing protein |
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| Protein accession | YP_002465216 |
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| Protein GI | 219850784 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3291] FOG: PKD repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.107112 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGAATA ACGAGGGAAA CGCTGAGATC ATGGGGGTCG TCCTGTTGAT CGCGATCTTC
GTCGCAGCCG TCGGGCTGAT GGGGATCACG ATGCTCTCAG CTCCGCAACC GGAGAAGGTG
CCGGCCGTGG CCCTCGACTT CTGGGCAGAT GACAGCCACA CCAACATCTC GCTGATCCAC
CGCGGCGGCG AGACGCTGAA CCTCTCGGGT GCGAAGTTGA TGGTCCTCTA CAGCGGCGAT
TCAACCGCCC AGGACAAAAC ATCAGCGTTC AACCTCACTA ACTCCTCCGG ATTATCTACA
CGCCTCTCTT CTACTACACC TGAACTTTAT TCCATCGGGG ACAACCTGAG TTTTACCGCC
GATAGGAAGA TCGATCAGGT GCAGCTGATC TGGCCCGGCA CCGGTCTGGC CAGCATGACC
GGCGGCGGTG GAGCGGTGCT GCTCGGGGCC TGGTCGCCGG ACAGCAGCAG CGGAAGGAAC
CCGCCGGCAG CCGTCACCGG GGCCGTGCCG ATCACATTCC CATACCCATC TGAGGGGCCG
ACCTGGACGC AGCCGACGCA GAACCCCACG GCCCCGTGGG TCTACTTCAT CGCGAACATC
ACCGCGACCA ACGGGACGGT GCCGATCAAC TTCACCGACC TGACCGATTA CCATGGATGG
TCGTCATCGT ACAAGAGATC CTGGAACTTT GGTGATAGTG GATCAAACGT CATCACCGAT
CAGACCAACC CATACACGTA TCCCTACTAT CAAGCACCGA CAGACTGGCC CTACATCAAG
AACTACACCG TCACCCTCAA CCTGACCGAC GAGAGCGATG TATTGACCCC GTACTCCCTG
GCCAGGCAAA ATTACATCTC GGTCTATAAA TCTCCCATCG CTGGATTCGA CGCCTCCCCA
CTGGAGGGGA ACTCAGGGAT GGAGGTCTGG TTCACCAACA CCACCACCGG ATATGAGACC
AGCCTCTCCT GGGACTTCGG TGACGAGAAT CGAACAACAA ACGCCTATCC AAGACCGGCC
TTCCCCTACA CCTATTACAA CCCCGGATCG ATCCAGCAGA ACTACACCGC TTCCCTGATC
GCCAATGTTG ACCTGGGAGA CAACCCTCAT GAGAGCAGCG ACCCCTTTCA GCGGGTCATC
ATAGTCCATC CGCAGGTGAT CGCCGCCTTC ACGGCCACCC CGATGACCGG ACCGGCGCCG
CTCACGGTCT CCTTCGATAG CAACAGTTCA CAGGGATATC TCCTCTCCTA CTTCTGGGAC
TTCGGCGACG GCACCACGTT CACCAGCCAG AATCCGCAGC ACACCTACAC CACCGCAGGG
AACTACACCG TCAACCTGAC AGTCAGCAAC ACCCTCCCCG GCCCCAACAC CAGTACGACG
AGCAGGACGA TCACCGTCAC CGCTCCACCG CTGGCACCGC CGGTCGCGAA CTTCACGGCC
ACCCCGATGA ACGGCACAGC ACCGCTCCTG GTCACCTTCA CAGACACGTC AACCAACACC
CCGACTACCT GGAACTGGTC GTTCGGTGAC GGGAACACCG CCACCCTCCA GAATCCGACC
CACACCTACA CCACGCCAGG TGCTTATACC GTCACCCTGA CGGTCAGCAA CGCAGTCGGA
AACAGCACGG CGACGAAGAC AGTCATGGTG TACAACAACC AGAACACGAT CCGGGTCGAC
GCCGGGTACG GTGCAAACTC CACCGACTGC CTGGGCAATG TCTGGCTGGC AGATCGGGAG
TACACCTCAG GCATGTGGGG CTACAGCCCG ACCGGAGCCC CGCTCTACTC GGTGAATGGA
TCCATCGCCA ACACATCAGA CCCAGCCCTG TATCGGACCA GCAGGTGGTC CACCACCGGA
ACGGTCGACT ATCAGTTCAA TGTACCGAAC GGGAACTACA ATGTGCAGTT AAAGTTTGCA
GAGACCGACA CGAGCATCAA CGCCGGCAAC CCGAGGAAGT TCGATGTCAC TGTCAACAAT
AACCCGGTGG CCTCCAGTTT TGACGTCTAT GGCACCGTCG GAGCCAACTC CACGGCAGAC
CTGTACTCGA ACGTGACCGT CATCGACAAC CTGATCCATG TCGTCCTGAA GGGCACCACC
GGACAGCCGA TGATCGCGGC GATCGGCATC GCCCCCGCCT CGACCTGGGT CTCGCCGGCC
TTCACCGCCA ACCAGACGAT CGGAAACACA CAGCTCCCGG TCCAGTTCAA CGACACATCA
ACAGGAACGG TGAACAGGTG GTTCTGGGAC TTCGGCGACG GTGCCACCTC CACCATCCAG
AACCCAACCC ACACCTACAC CTTGCCGGGT ACCTACAAGG TGATGCTGAC CGCCGGGAAC
GCCAACCAGA GCGGAACAGT CGTGAAGAAA GACTACATCA CCGTCGGGCC GGCCCTGGCC
GCGAACTTCA CCGCGAATCC GACCACCGGC ATCGCCCCGC TCGCAGTCGG GTTCACCGAC
ACCTCCACCG GAAACGGGAT CTCGAACTGG TCCTGGACCT TCGGCGACGG TGCCACCTCC
ACCATCCAGA ACCCAACCCA CACCTACACC TTGCCGGGTA CCTACAACGT CACCCTGACC
GTCACCAACC CCTATGCCAG CGCCTCAACG ACGAAGACGA TCACCGTCCA CTCGCTGAAC
CCGAACTTCA CCGCAAACAG GACGATCGGC AACGCACCAC TCCCGGTCCT CTTCACCGAC
ACCACGACGA GCGACCTTGC CGTCAACGCC TGGACCTGGA ACTTCGGGGA CAACAGCACC
GCCACCACCC AGAGCCCAAC CCACTCCTAC ACGACACCCG GAATCTACAC CGTCACCCTG
ACCGTCTCCA ACACCAGCCT CGGGTTCACC AACACCACCA CGAAGAGCGC CTACATCACC
GTCCTCCAGC CGCTGGTGCC GAACTTCACC GCCAACAGAA CCGCCGGCAA CGGACAGGTC
CCGGTCCAGT TCACCGACAC CACCACCGGC ACCTCGATCA CCACCTGGAC CTGGAACCTC
GGCGATGGGA ACACCTCCAC CCTCCAGAAC CCGACCCACA CCTACACCAC GCCGGGCACC
TACACCGTCA CCCTGACCGC CGGCAATGCC TATGGAAACG GTACGGTCAC CAGGACCGGA
TACATCACCG TCTACCCACC GCTCGTCGCG GCCTTCGGCG GAGCACCGCT CCTCGGCAAC
GCACCGCTCA ATGTTTCGTT CGTAGATCAA TCCACCGGGT TCACCATCAG CGGCTGGAAC
TGGACCTTCG GCGACGGCAC CACCTCAACA AGCCAGAGCC CGCAGCACAC CTACACCGCC
GGAGGGAACT ACACCGTCAC CCTGACGATC ACCAACGCGT ATGGCACCGC CAGCATCTCA
AAGCCGGCCT TCGTCACGGT CCTGCCGCAG CTGGTCGCGA ACTTCACCGC CAACAGGACG
GCCGGCAACG CACAGTTCCC GGTCCAGTTC ACCGACACCT CGACCGGGAG CGGGATCAAC
GGCTGGTCAT GGAACTTCGG CGACAACACC ACGACATCAG CCCAGAACCC GACCCACACC
TACACCACCG CAGGGAACTA CACGGTCTCC CTGACCGCGT TCAACCCGTA TGGAAACACC
ACCACGATCA GGACCAACTA CATCACCGTC CTGAACCCAC CGGTCGCCGC CTTCACCGGC
ACACCGACCG TCGGCAACGG GCAGGCGAAC GTCACGTTCA CCGACCAGTC CACCGGGGAC
GGCATCATCA CCTGGGCCTG GACCTTCGGT GACGGAAACA CCGCCACCAC CAGGAGCCCG
CAGCACCTGT ATACCAACCA GGGAACCATC CCGAAGACGT TCAATGTCAC CCTGACTGTC
ACCAACGCCT ATGGAAGCGG CACGACCACC AAAACCGGGT ACATCACCGT CTACCCGCCG
CTGGTCGCCA ACTTCACGAC GACCGCGACC ACCGGATATG CCCCGCTGCA GGTCGACTTC
ACCGACACCT CGACCGGCTA CAACATCATC GCCTGGACCT GGAACTTCGG CGACGGCAGC
CAGACAGGGA TCAGTCAGAA CGTGAGCCAC TCCTACAACA CGCCAGGCAC TTACACAGCC
ACCCTGGTCG TCACCAATCC GTTCGGGCAG AGCACCCAGG CCACGAGAAC GATCACCGTC
AACGCGCCAG CGACGACGCC GACCCCGGCA GGAGGGCTGA TCAACGGAAC GATCTACAAC
GATCAGAACG GCGACGGCGT GGCGAACACC GCTGACCCGA AGCTCGCCGG CTGGACGATC
AACCTGTTCC TGAACGGAAA TGTCATCGCA ACGACGACGA GCGATGCAAA CGGAGCCTAT
GCATTCTACG GGCTGGACAA TGCAAAGGGC TACACCGTCG TGGAGGTGCT TCCGATGGGC
TGGAGGGGAA CGAACCCGGC AGGTGGAACC ACCGGTTCAG TTCAGATCAA CCCGGGCAGC
AAGAGTGCCT ACACGAACAC CAACTTCTGG AACTACTACA AGCCGGTCTC TCCAGGCGGA
CCCATCACGC TGAACGCTGC CAAACCGGGA TCCCTGGTGA GCGGCGGTTA CTTCCAGTTC
AGGGACACCG TCGCCTGGTC CGGGTCGACC GGGGTCTCGA TCGACGGCAC CTTCCACCAG
ATCAACCAGG ACGATATCGT CAGACTGACC ATCGAGAAGA GCGGGAGTGC AAACATCCAG
ATCTCGAGCG GAGGGATCTG GACCTTCACA GCTCCGGACG CGACCCTCTC GATCAACGGC
GTCGTCATCC AGAGAGGTGC CGTAACCGGG ATCGCCATCC ACGGATTCGA CACCCTCCAG
TCGACCCTGG CAGTGACCGT TCCCTCGCAG AATGTCTGGA CCAGTTTCAC GGTGAACGGT
GGACAGGTCA TCCCGGGCCA GAACGACAAC CGGATCATCA ACCTGTACAA CGTCACCACC
GGCACTGATG GAGGGCTCAA CCTTCAGGTT GGCGCCGACA TCTATATCAT CGGAAGCACC
GGCACCTATC AGCTCCTCCC CTGA
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| Protein sequence | MVNNEGNAEI MGVVLLIAIF VAAVGLMGIT MLSAPQPEKV PAVALDFWAD DSHTNISLIH
RGGETLNLSG AKLMVLYSGD STAQDKTSAF NLTNSSGLST RLSSTTPELY SIGDNLSFTA
DRKIDQVQLI WPGTGLASMT GGGGAVLLGA WSPDSSSGRN PPAAVTGAVP ITFPYPSEGP
TWTQPTQNPT APWVYFIANI TATNGTVPIN FTDLTDYHGW SSSYKRSWNF GDSGSNVITD
QTNPYTYPYY QAPTDWPYIK NYTVTLNLTD ESDVLTPYSL ARQNYISVYK SPIAGFDASP
LEGNSGMEVW FTNTTTGYET SLSWDFGDEN RTTNAYPRPA FPYTYYNPGS IQQNYTASLI
ANVDLGDNPH ESSDPFQRVI IVHPQVIAAF TATPMTGPAP LTVSFDSNSS QGYLLSYFWD
FGDGTTFTSQ NPQHTYTTAG NYTVNLTVSN TLPGPNTSTT SRTITVTAPP LAPPVANFTA
TPMNGTAPLL VTFTDTSTNT PTTWNWSFGD GNTATLQNPT HTYTTPGAYT VTLTVSNAVG
NSTATKTVMV YNNQNTIRVD AGYGANSTDC LGNVWLADRE YTSGMWGYSP TGAPLYSVNG
SIANTSDPAL YRTSRWSTTG TVDYQFNVPN GNYNVQLKFA ETDTSINAGN PRKFDVTVNN
NPVASSFDVY GTVGANSTAD LYSNVTVIDN LIHVVLKGTT GQPMIAAIGI APASTWVSPA
FTANQTIGNT QLPVQFNDTS TGTVNRWFWD FGDGATSTIQ NPTHTYTLPG TYKVMLTAGN
ANQSGTVVKK DYITVGPALA ANFTANPTTG IAPLAVGFTD TSTGNGISNW SWTFGDGATS
TIQNPTHTYT LPGTYNVTLT VTNPYASAST TKTITVHSLN PNFTANRTIG NAPLPVLFTD
TTTSDLAVNA WTWNFGDNST ATTQSPTHSY TTPGIYTVTL TVSNTSLGFT NTTTKSAYIT
VLQPLVPNFT ANRTAGNGQV PVQFTDTTTG TSITTWTWNL GDGNTSTLQN PTHTYTTPGT
YTVTLTAGNA YGNGTVTRTG YITVYPPLVA AFGGAPLLGN APLNVSFVDQ STGFTISGWN
WTFGDGTTST SQSPQHTYTA GGNYTVTLTI TNAYGTASIS KPAFVTVLPQ LVANFTANRT
AGNAQFPVQF TDTSTGSGIN GWSWNFGDNT TTSAQNPTHT YTTAGNYTVS LTAFNPYGNT
TTIRTNYITV LNPPVAAFTG TPTVGNGQAN VTFTDQSTGD GIITWAWTFG DGNTATTRSP
QHLYTNQGTI PKTFNVTLTV TNAYGSGTTT KTGYITVYPP LVANFTTTAT TGYAPLQVDF
TDTSTGYNII AWTWNFGDGS QTGISQNVSH SYNTPGTYTA TLVVTNPFGQ STQATRTITV
NAPATTPTPA GGLINGTIYN DQNGDGVANT ADPKLAGWTI NLFLNGNVIA TTTSDANGAY
AFYGLDNAKG YTVVEVLPMG WRGTNPAGGT TGSVQINPGS KSAYTNTNFW NYYKPVSPGG
PITLNAAKPG SLVSGGYFQF RDTVAWSGST GVSIDGTFHQ INQDDIVRLT IEKSGSANIQ
ISSGGIWTFT APDATLSING VVIQRGAVTG IAIHGFDTLQ STLAVTVPSQ NVWTSFTVNG
GQVIPGQNDN RIINLYNVTT GTDGGLNLQV GADIYIIGST GTYQLLP
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