| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_3839 |
|---|
| Symbol | |
|---|
| ID | 7266319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | + |
|---|
| Start bp | 4677295 |
|---|
| End bp | 4678035 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643568650 |
|---|
| Product | orotidine 5'-phosphate decarboxylase |
|---|
| Protein accession | YP_002465110 |
|---|
| Protein GI | 219850677 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000423738 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATCT CGGCTCGGGA ACGGATCTTT GTAGCACTCG ATACTCCCGA CGTAGCTATG
GCAATAGCCC TGGCCTCACG GCTACGCGGG TTGGTTGGCG GTTTCAAAGT AGGGCTGGAG
ATTTGTACGG CAGTAGGTGC GCCACAGGTA GTACGAGCGC TGGCCGATGT TGGTGGGAGT
GTATTTCTCG ATCTTAAATT GCACGATATT CCCAATACGG TAGCCGGTGC GGTGCGGGCA
GTGTGTGCGT TGGGTCCTGC GGTACGTATG CTAACCCTTC ATTGCACCGG TGGCAGCGCA
ATGTTGCGTG CCGCAGTCGT CGCCGCTCAA GCGATGCCGC AGCGCCCGTT GTTACTCGGC
GTTACTGTGT TGACCAGCCT CGATGCAGCG GCGTTGTCCG GCGAATTACA AGTTGTACCC
TCGGTGACTG AGTATGTGGT ACATTTAGCC CGGATGGCGC AGGCTTGTGG CCTCGATGGA
GTTGTCGCTT CACCCCACGA AGTAGGCGCG ATCCGAGCTG CGTGCCCTGA TATGCGCATT
ATTACGCCGG GTATCCGGCC TCGGTGGGCT GCTGAGGGCG ATCAACGACG GGTCATGACT
CCGGCTGATG CGCTACGCGC CGGGGCTGAT TATCTTGTTA TTGGTCGCCC GATTACAAAC
CCGCCACCGA TAATCGGTGA TCCGGTGGCG GCAATTGACC GGCTCTTAGC CGAGATTGAA
CAAGCGAGTA CCATGCAATG A
|
|---|
| Protein sequence | MSISARERIF VALDTPDVAM AIALASRLRG LVGGFKVGLE ICTAVGAPQV VRALADVGGS
VFLDLKLHDI PNTVAGAVRA VCALGPAVRM LTLHCTGGSA MLRAAVVAAQ AMPQRPLLLG
VTVLTSLDAA ALSGELQVVP SVTEYVVHLA RMAQACGLDG VVASPHEVGA IRAACPDMRI
ITPGIRPRWA AEGDQRRVMT PADALRAGAD YLVIGRPITN PPPIIGDPVA AIDRLLAEIE
QASTMQ
|
|---|
| |