Gene Cagg_3569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_3569 
Symbol 
ID7269712 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp4333617 
End bp4334498 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content59% 
IMG OID643568376 
ProducttRNA pseudouridine synthase B 
Protein accessionYP_002464843 
Protein GI219850410 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID[TIGR00431] tRNA pseudouridine 55 synthase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.687406 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGACCG ATTTAGCGGG GTTTGTGATT ATCGATAAGC CGGCCGGACT CACTTCACAC 
GACGTTGTGG CCCACGTGCG ACGATTGGTC GGACGGGTAG TGAAGGTAGG CCACGCCGGT
ACGCTCGACC CAATGGCGAC GGGGGTGTTG CCGGTAGCTT TGGGGAGCGC GACTCGGCTG
CTCGACCAGT TGGTTGATAC CCGAAAAGGT TATCTCGGCG TGGTGCGGTT AGGTATCCAG
ACGACGACTG ACGATGCCGA TGGTGAACCG CTGGTGACGC AGGCGGTTCC CGAACTCACG
CCGGAGACTA TCGAGACGGT ATTAACCCGC TTTCGCGGTG ATATTCTGCA ACAACCACCG
GCTTTCTCGG CACTTCACAT TGATGGTCAA CGCGCGTATG CGTTAGCTCG CGCCGGCAAC
GAAGTAACGT TGGCGCCCAA ACCGGTACGG ATCGAACGGC TTGATCTCCT CGCCGTAGCG
TTGCCCGATC TGACCATTGC TGTCGAGTGT AGTAAGGGCA CCTATATCCG TGCCTTAGCA
CGTGATATTG GCGCGGCGCT TGGCTGTGGT GGCCATCTCG CCTCGCTCCA ACGCATCTTC
ACCGGCCCGT TTCGGCTTGA ACACGCAATA CCACTAGCAG CGTTGACCGA TCGGGGAGCG
GTGATGCGGC ATCTGCTACC ACCGGAGACG GCCCTGCTCG ATTGGCCGCT TGTGCAACTC
GATGCAACCA ATGCATACCG TATCCTGCAC GGTATGTCAA TTCCTGCCGG CGAATCAACG
GCTACTCGTG CGCGCGCTCA CGATCCTGAT GGGAAGCTCA TTGCCCTGCT GCGGCGTAAC
GGCGAGCGTT GGCAACCCGT GAAAGTTTTT CGTCATCGTT AA
 
Protein sequence
MMTDLAGFVI IDKPAGLTSH DVVAHVRRLV GRVVKVGHAG TLDPMATGVL PVALGSATRL 
LDQLVDTRKG YLGVVRLGIQ TTTDDADGEP LVTQAVPELT PETIETVLTR FRGDILQQPP
AFSALHIDGQ RAYALARAGN EVTLAPKPVR IERLDLLAVA LPDLTIAVEC SKGTYIRALA
RDIGAALGCG GHLASLQRIF TGPFRLEHAI PLAALTDRGA VMRHLLPPET ALLDWPLVQL
DATNAYRILH GMSIPAGEST ATRARAHDPD GKLIALLRRN GERWQPVKVF RHR