| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_3313 |
|---|
| Symbol | |
|---|
| ID | 7267789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | + |
|---|
| Start bp | 4012138 |
|---|
| End bp | 4014264 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643568126 |
|---|
| Product | ABC-type sugar transport system periplasmic component-like protein |
|---|
| Protein accession | YP_002464597 |
|---|
| Protein GI | 219850164 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02637] rhamnose ABC transporter, rhamnose-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00237861 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCGA CCAAACGATA CCTGTTCGTA GCTATGACGC TGATGATTGC CTTGTTGTTG
GCGGCATGTA CGCCACAGGC TCAGACTCCT GCACCGACGG CAGCACCGGC GCCGACGACA
GCTCCCGCGC CGACCAGCGC TCCCGCGCCG ACGACTGCCC CGACCGGTGG TATAGTCTCG
GCGACCCCCG GTCTTGACAT CAACATGATC CTGTTGCCTA AGTTCCTTGG CATCGCCGTC
TTTGATCAGG CCTACGAAGG CGCGAAAGAG GCGCATGCCG AATTGGGCAA CAAAGGCAAT
CTGATCTTCA CCGGTCCGAC GGCCGAGAAC TCGGTGGCGG GGCAGATCGA GACGTTGACC
AACGCGGCGA CACAGGGAGT GAAGGCGGTG ATGCTCTCGA ACAACGCCGG CGACCAGATT
GCGGCAGCGG CGCAAGCGGC GCAGGCGGCG GGGGTGAAGG TGGTGACGTG GGATTCACCC
ATTCCGTCGG CGCAAGGCGA GAGCGTGTTC GTGGCGCAGG TTGATTTCAA CGAGACGGGG
CGGGTGATGG CGGATATGGC GCTGTCGATC CTTGGCCCGC AGGGTGGTGA ATTCGCGATC
TTGTCGGCCT CGCCCGACGC GGCGAACCAG AATGCGTGGA TTGCGGCGAT GAAGCAGGTG
CTGACCGAGC CGAAGTACGC CAATCTGAAG CTGGTGGATA CGGTGTACGG CAACGACCAG
TCGGAAGAGA GCTACAATCA GGCGCTGGCG TTGGTCGACA AATACCCGAA CTTGAAGTTG
ATAATGGCGC CGACGACGGT GGGGATTGCG GCGGCGGCCA AGGCGATGAC CGACGAGGGC
TTGTGCGACA AGGTGAAGGT GTCGGGCTTG GGCTTGCCGT CGGAGATGGT GAGCTACACG
CTGAGCGGGT GTGCGCCGCA GTTCGCCTTG TGGAGCTTCA AAGACCTCGG TTACTTGACT
TACTATCTCG CTTACGGTCT GGCCACCGGC CAACTGCAAG GCGTTGAAGG CGAGCGGTTC
AATGCCGGGC GAATGGGGAC GTACACCATT GAAAAAGACC CAACCCGGCC CAACGGCTTG
CGCGTGCTGA TGGGGCCGTT CACCGTCTAC ACCGCTGAAA ATATTCTGCA AGAGGTCGAA
GCGCCGAGCG GCACGGTGCG CGATCCAATC ACGCTGCGAG CCGGCCAGCG CGCCGATATG
ATCCTGTTGC CCAAGTTCCT TGGCATCGCC GTCTTTGATC AGGCCTACGA AGGCGCGAAA
GAGGCGCATG CCGAATTGGG CAACAAAGGC AATCTGATCT TCACCGGTCC GACGGCCGAG
AATTCGGTGG CGGGGCAGAT CGAGACGTTG ACCAACGCGG CGACACAGGG AGTGAAGGCG
GTGATGCTCT CGAACAACGC CGGCGACCAG ATTGCGGCAG CGGCGCAAGC GGCGCAGGCG
GCGGGGGTGA AGGTGGTGAC GTGGGATTCA CCCATTCCGT CGGCGCAAGG CGAGAGCGTG
TTCGTGGCGC AGGTTGATTT CAACGAGACG GGGCGGGTGA TGGCGGATAT GGCGCTGTCG
ATCCTTGGCC CGCAGGGTGG TGAATTCGCG ATCTTGTCGG CCTCGCCCGA CGCGGCGAAC
CAGAATGCGT GGATTGCGGC GATGAAGCAG GTGCTGACCG AGCCGAAGTA CGCCAATCTG
AAGCTGGTGG ATACGGTGTA CGGCAACGAC CAGTCGGAAG AGAGCTACAA TCAGGCGCTG
GCGTTGGTCG ACAAATACCC GAACTTGAAG TTGATAATGG CGCCGACGAC GGTGGGGATT
GCGGCGGCGG CCAAGGCGAT GACCGACGAG GGCTTGTGCG ACAAGGTGAA GGTGTCGGGC
TTGGGCTTGC CGTCGGAGAT GGCGAGCTAC ACGCTGAGCG GGTGTGCGCC GCAGTTCGCC
TTGTGGAGCT TCAAAGACCT CGGTTACTTG ACTTACTATC TCGCTTACGG TCTGGCCACC
GGCCAACTGC AAGGCGTTGA AGGCGAGCGG TTCAATGCCG GGCGAATGGG GACGTACACC
ATTGAAAAAG ACCCAACCCG GCCCAACGGC TTGCGCGTGC TGATGGGGCC GTTCACCGTC
TACACGGCGG AAAATGTGAA CAAATAG
|
|---|
| Protein sequence | MQATKRYLFV AMTLMIALLL AACTPQAQTP APTAAPAPTT APAPTSAPAP TTAPTGGIVS
ATPGLDINMI LLPKFLGIAV FDQAYEGAKE AHAELGNKGN LIFTGPTAEN SVAGQIETLT
NAATQGVKAV MLSNNAGDQI AAAAQAAQAA GVKVVTWDSP IPSAQGESVF VAQVDFNETG
RVMADMALSI LGPQGGEFAI LSASPDAANQ NAWIAAMKQV LTEPKYANLK LVDTVYGNDQ
SEESYNQALA LVDKYPNLKL IMAPTTVGIA AAAKAMTDEG LCDKVKVSGL GLPSEMVSYT
LSGCAPQFAL WSFKDLGYLT YYLAYGLATG QLQGVEGERF NAGRMGTYTI EKDPTRPNGL
RVLMGPFTVY TAENILQEVE APSGTVRDPI TLRAGQRADM ILLPKFLGIA VFDQAYEGAK
EAHAELGNKG NLIFTGPTAE NSVAGQIETL TNAATQGVKA VMLSNNAGDQ IAAAAQAAQA
AGVKVVTWDS PIPSAQGESV FVAQVDFNET GRVMADMALS ILGPQGGEFA ILSASPDAAN
QNAWIAAMKQ VLTEPKYANL KLVDTVYGND QSEESYNQAL ALVDKYPNLK LIMAPTTVGI
AAAAKAMTDE GLCDKVKVSG LGLPSEMASY TLSGCAPQFA LWSFKDLGYL TYYLAYGLAT
GQLQGVEGER FNAGRMGTYT IEKDPTRPNG LRVLMGPFTV YTAENVNK
|
|---|
| |