Gene Cagg_3245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_3245 
Symbol 
ID7267392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp3931288 
End bp3933870 
Gene Length2583 bp 
Protein Length860 aa 
Translation table11 
GC content52% 
IMG OID643568066 
Productsignal transduction histidine kinase, nitrogen specific, NtrB 
Protein accessionYP_002464539 
Protein GI219850106 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG3852] Signal transduction histidine kinase, nitrogen specific 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.48627 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGAAC AGTGGAACGC GACTCAGGCT CGTTTGCTCG CCGATGTCGG TGTATTTCTC 
GTCTCGCTAG GTCGGTCTGA GGCGTTTCAA CAGATTGCTC GTCGTCTTGT CCCTTTGTTA
GGTGATTGGT GCATTATCAT CATCCGTGAT GAACACCACC AACCGCGTCG CGTTGCCGTA
GCCTGTGCCG ATCCAAGCAA GCAGGCGTTA GCTGCTCGAC TTATCCAAGA GGCGGTTCTT
CAAGAGACGT ACTCACCGCC GGTACAGGTA TTGACTACCG GACAACCGCT TTTGCTGCTC
GATCTCCCGG ACGATTATAG TGAGAATCCG AATTTTTCGC CAGCTTACCG CGAGCTTGTA
CGACAAATCA AGCCTCGCCA AGTGTTGTCC CTGCCGATAT GGGTACGAGA TCGGGTGGTA
GGAGTATTGG TTTTGCTCAT TACCGCCCCC TCGCAGCGGC ACTTTGCGCA AGATGATCTC
ATCTTAGCTG CTGAGATAGC TAAACGGCTA GCACTGGCCG TAGAGAATCT CCTCCTCTAT
CGCTCGATGC AGCGTCGTCT CGACCAATTG TTGCTCGTGC AACGGGTTGC CGGTCTGGTC
AATTCAGTAT TGCAGACTGA AAAGCTCTGC CGGTTAGTCG TGCAGCAATT GCACGATACC
TTCGGGTATC ATCTGATAAG TATTTACCTG CTGCAAGACG GTGTATTACG GCAGCAAGCG
GTGGTCGGTT ACGATCAGGT ATTGCCGGTC ATCCAGTTGC ATGAAGGGGT AGCCGGGCGA
GTGATGCGCA CCGGTCAAGC TGAGTTTGTG CGTGATACAA CGGGTGACCC TGATTTTATT
GAGGTGTATC CGGGAACAAC CCAATGTATT GTGGTACCGT TGCGCCACGG TGAGGCGAAG
CCTGTCGGTG TGATTATTGT CGAGTCACTC GGCAATCCGA CGCTTGATGA CGAAGACTTC
TTGTTGCTCT CGTTGCTGGC CGATCAGATT AGCATCGCTC TGCTCAATAC GATGTTGTTC
GCCCGCATAA TAGAATCGTT TGAGCGGTTT CGCTCTCTGA TCGAACTGGC CGGTAACGCG
ATTATTTGTC TCAGCCCGCA GTTGCGCATC ACCGAATTCA ATCGCATGGC AGAGCAGTTG
TTTGGGTACA TGCGCAGTGC GATGATCGGA GCCGACTTCT CAACGACACT CTTGTCGGAA
GCCGAACGAC CGCTGTTTTT GGCGTTGGTG CGCGAAGTTG AGCAGCGTGG TAGCAGTCGG
TCGTTTGAAA CAATCCTTTG TAAGGCAGAT CGCAAACATT ATTTGACGTG GACGGTGACG
TGTCGGCGAC ACCTGAGTGG CGAACTTGCC GAACTACTAC TTGTTTGCCA GGACTTGACC
GAGCAGCGAG AGATGACGGC TGAGTTGCTT CAGTATGAAC GTCGCTTACA GAACCTTGAG
CGGTTAGAGA GTTTAGCGAT TATGGCAGGT GGTATCGCCC ACGATTTTAA CAATCTGCTC
ACTGTCATTG AGGGTAATGC TAATTTTCTT AAAAATGCCA TAACAGCAAC ACATCCGGTC
GATCAATATT TGCAAAATCT CCTCACTGCA ACGCAGCAAG CCGGTGGATT GGTAGAGCAA
TTGCTGCGGT TTGCCGTTGC CGATCCGCTT AAACTACAGC AAATTGACCT AAACCGGTTG
ATTGAGAAAG CCATACCGAT ACTTCAAACC ACGTTGAAAC ATCCCGCAGT GATACGGCTC
GATCTTGATC CGGCTTTGCC ACCGATTCGG GCCGACCCGA CGCAGATTCG GCAAGTGCTG
CTGAATCTCT TTATGAATGC GGTTGATGTG TTGCCGGAGC AGAACGGTTG CATCTGTATA
CAGACAGCGT TGCGCGCGAT TGATGCCAAC GAGTTCGTCG GTTTTATCTC TCCCCACCGG
CTCACGTCCG GTAAGTATGT GACGATGTCA GTACACGACA ACGGGCATGG GATTGATCCG
AAGATGCAGC AACAGATTTT TGAACCATTC TTTACGACAA AGGTGCATGG ACATGGTCTA
GGATTACCGA GTGTACTGAA CATCGTCCGT CAGCATGGCG GTGCAATTGA AGTCAAGAGC
CGACCCGGAG AAGGGAGTAC TTTCACCGTC TGGTTCCCAC CTTTGCAGCC AAGTACTGAA
CAAGGAGCAC TACCAGGTAC CGTTATCGGT AGTGAGTCAC CGTGCGTTTT GGTGGTTGAC
GATAACAAGG ATGTTCGCTC ACTCATCGAA CGGCTGTTAC GTCAGGCCGG TTATCGTGTT
AAGGCGATGG CCAATGGCAG TGAAGCGCTG CACCTTGTGA CGCAGGGACA GGCAATTGCG
TGTGCTTTGG TTGATATTAC GCTCGCCGAC ATCAGTGGTT ATGACGTTTG TCGTCGGATT
GCCGAACTTA ACCCATGCAT TCCCTTGGCA TTGATCAGTG GGTATCCGGT GGAAGCAGCG
AGTATTGGTG AGGTCTCGGT GGCGGCAACG TTACAAAAGC CGTTTCGGGC GCAGGAGTTA
TTGTCGGTGG TGCAGCGATT GATCGAAATC CGGGCCGAGT TATTGAGAAA ACAGAGATGC
TAG
 
Protein sequence
MQEQWNATQA RLLADVGVFL VSLGRSEAFQ QIARRLVPLL GDWCIIIIRD EHHQPRRVAV 
ACADPSKQAL AARLIQEAVL QETYSPPVQV LTTGQPLLLL DLPDDYSENP NFSPAYRELV
RQIKPRQVLS LPIWVRDRVV GVLVLLITAP SQRHFAQDDL ILAAEIAKRL ALAVENLLLY
RSMQRRLDQL LLVQRVAGLV NSVLQTEKLC RLVVQQLHDT FGYHLISIYL LQDGVLRQQA
VVGYDQVLPV IQLHEGVAGR VMRTGQAEFV RDTTGDPDFI EVYPGTTQCI VVPLRHGEAK
PVGVIIVESL GNPTLDDEDF LLLSLLADQI SIALLNTMLF ARIIESFERF RSLIELAGNA
IICLSPQLRI TEFNRMAEQL FGYMRSAMIG ADFSTTLLSE AERPLFLALV REVEQRGSSR
SFETILCKAD RKHYLTWTVT CRRHLSGELA ELLLVCQDLT EQREMTAELL QYERRLQNLE
RLESLAIMAG GIAHDFNNLL TVIEGNANFL KNAITATHPV DQYLQNLLTA TQQAGGLVEQ
LLRFAVADPL KLQQIDLNRL IEKAIPILQT TLKHPAVIRL DLDPALPPIR ADPTQIRQVL
LNLFMNAVDV LPEQNGCICI QTALRAIDAN EFVGFISPHR LTSGKYVTMS VHDNGHGIDP
KMQQQIFEPF FTTKVHGHGL GLPSVLNIVR QHGGAIEVKS RPGEGSTFTV WFPPLQPSTE
QGALPGTVIG SESPCVLVVD DNKDVRSLIE RLLRQAGYRV KAMANGSEAL HLVTQGQAIA
CALVDITLAD ISGYDVCRRI AELNPCIPLA LISGYPVEAA SIGEVSVAAT LQKPFRAQEL
LSVVQRLIEI RAELLRKQRC