| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_3212 |
|---|
| Symbol | |
|---|
| ID | 7267359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | + |
|---|
| Start bp | 3896697 |
|---|
| End bp | 3897632 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643568033 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_002464506 |
|---|
| Protein GI | 219850073 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2064] Flp pilus assembly protein TadC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.514288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGAAA TCTTAGTTCT CACCGGTGTT TTAGTGATAG GAGCTGCACT GATTATCATC
GCCGTTAGGC AGATGAACCA GTCGCGTGCA ATTAGTGAGC GTCTCGATCA ATATACCGAT
GTTTCGTTGT CGCTCGAAGA GTTGGAGTTG CAGCAGCCGT TCCGTGAGCG TGTGCTTATT
CCGATGTTTC GCGCGTTGTT GAGTTACTTG GGTCGCTTTG GACTCAAGCA AAATCAGGAA
CGCTTGCGGG CGAATCTGCA AATGGCCGGT AATCCCGGTA ATATTTCACC CAATATGTTC
ATTGGGTTGC GAATGGCACT GGCTCTTACG TTGGCGACTG TCATCGTTCC GCTGGTGATA
GGTCGTTTGT CGCTTATTCA GGCTCTGGCC GGTGTAGCAA TTGCATTTAT GATCGGCTAT
ATCTTGCCCG GTATTTGGCT TGATCGTAAG ATTAAAGAGC GCAAGAAGAA TATTCTTAAA
GCGCTACCTG ATGCGCTTGA TCTGCTCTGT ATTAGTGTCG AAGCAGGTCT GGCGTTTGAT
TTGGCTCTGC AACGTGTGGC CCAAAAGTGG GACAACGAAT TGTCGCACGA GTTTCAGCGT
GTGCTACAAG ATATCCGGCT TGGCCGCACT CGCCGTGAGG CATTACGGGA TATGGCAGCG
CGTACCGGTG TCGAAGATGT GCAGACGTTC GTTTCAGCAG TGATTCAGGC CGACCAGTTG
GGTGTCTCGA TGTCAAAGAT CTTGCGTATT CAGTCCGATC AGTTGCGTAC TCGCCGCCGC
CAACGTGCTG AAGAAGCTGC ACAAAAAGCA CCGGTTAAGA TGTTGATTCC AATGGTCTTC
TTGATCTTCC CGGCTCTGTT TGTTGTCATT CTTGGCCCTG CAGTGCCCCG GATTATGTCG
GCATTGGGGG TGATGAATAG CGGCATGGGT AACTGA
|
|---|
| Protein sequence | MMEILVLTGV LVIGAALIII AVRQMNQSRA ISERLDQYTD VSLSLEELEL QQPFRERVLI
PMFRALLSYL GRFGLKQNQE RLRANLQMAG NPGNISPNMF IGLRMALALT LATVIVPLVI
GRLSLIQALA GVAIAFMIGY ILPGIWLDRK IKERKKNILK ALPDALDLLC ISVEAGLAFD
LALQRVAQKW DNELSHEFQR VLQDIRLGRT RREALRDMAA RTGVEDVQTF VSAVIQADQL
GVSMSKILRI QSDQLRTRRR QRAEEAAQKA PVKMLIPMVF LIFPALFVVI LGPAVPRIMS
ALGVMNSGMG N
|
|---|
| |