Gene Cagg_3210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_3210 
Symbol 
ID7267357 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp3894270 
End bp3895661 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content53% 
IMG OID643568031 
Producttype II secretion system protein E 
Protein accessionYP_002464504 
Protein GI219850071 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.532215 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTTAT TGAAACGAAT TGGTGGTGCA ACTCCTCCGC CGGTAGAACC GACGGTGTCG 
CGGTCGCCGG TGCGCCCCGA AACCGGACGT ATAGCACCGG TTGGTGTGCC GAATACGGAA
GATACGTTCC GAGAGCTACG TGCTCGTGTG CAGGATCGCC TCATCAACGA GCTAAACTCG
CAGATTGATT TGAATAATCA GGCGAAAGTG CGCAAGCAGG TCGAAGAGAT CTTTAACTCG
ATCCTCGATA GTGAAAGTAT TGTGCTCTCG CGGGCTGAGC GCCAACGCCT TTTCGAGAGT
ATTACCGCCG ATATTATCGG TTTGGGGCCG CTCGAGCCAT TGCTGGCCGA TGATGATGTA
AGCGAGATCA TGGTCAACGG GCCAAAGCAG GTCTATATTG AAAAGAAAGG TAAGTTGATC
AAAACCGACA TCACGTTTGC CGATGACGAT CACGTGATGC GGATTATCGA CCGCATTGTG
GCTCCGTTGG GCCGCCGCGT TGATGAATCA TCGCCAATGG TTGATGCCCG TCTCAAAGAC
GGTTCGCGGG TGAATGTGGT AATCCGTCCG TTGGCATTGA ATGGACCGAC AATTACTATC
CGCAAGTTCC GCAAAGACAA ACTCACCGTA CAAGATTTGG TGCGCTTTGG CTCGATGTCG
CAAGATATGG CTGATTTTCT TGCCGCTTGT GTTCAAGCGC GCCTCAATAT TGTGGTTGCC
GGCGGTACCG GTTCCGGTAA GACCACCCTA TTGAACGTAC TGTCGTCGTT CATCCCGGAA
GATGAGCGGA TTATTACCGT CGAAAATGCT GCCGAATTGC AGCTTCGCCA AGAGCATGTG
GTGACCCTCG AATCACGTCC GCCAAACGTG GAAGGTAAGG GTGAAGTTAC CATCCGTGAT
CTAGTCATCA ACTGTCTGCG TATGCGTCCT GAGCGGATTA TTGTCGGTGA GTGTCGCGGC
GGTGAGACCC TCGACATGTT GCAGGCAATG AACACCGGTC ACGATGGCTC GATGACGACG
ATCCACGCGA ATTCGCCACG TGATGCAGTG AGCCGTATCG AGACTATGTG CTTAATGGCC
GGTATGGATC TCCCTGCACG CGCCATTCGT GAGCAGATCG CGTCGGCTAT TCATGTGTTC
GTCCAACAAT CGCGCCTGAA AGATGGTTCA CGTAAGGTGA CCCAGATTAC CGAAGTCGCC
GGTATGGAAG GTGATGTGGT TGTTCTCCAA GATATTTTCG TCTTTGAGCA GACGGGTATT
GATGAGAAAG GCAAGATTGT TGGTCATCTG CGCCCGACCG GTGTTCGACC ACGCTTCCTC
GAGAAGTTTG AAGCGCTTAA TATCTTCTTG CCGCCAACCA TTTTCGGTGC GTCGGAACGC
TTCAGCTTCT AA
 
Protein sequence
MSLLKRIGGA TPPPVEPTVS RSPVRPETGR IAPVGVPNTE DTFRELRARV QDRLINELNS 
QIDLNNQAKV RKQVEEIFNS ILDSESIVLS RAERQRLFES ITADIIGLGP LEPLLADDDV
SEIMVNGPKQ VYIEKKGKLI KTDITFADDD HVMRIIDRIV APLGRRVDES SPMVDARLKD
GSRVNVVIRP LALNGPTITI RKFRKDKLTV QDLVRFGSMS QDMADFLAAC VQARLNIVVA
GGTGSGKTTL LNVLSSFIPE DERIITVENA AELQLRQEHV VTLESRPPNV EGKGEVTIRD
LVINCLRMRP ERIIVGECRG GETLDMLQAM NTGHDGSMTT IHANSPRDAV SRIETMCLMA
GMDLPARAIR EQIASAIHVF VQQSRLKDGS RKVTQITEVA GMEGDVVVLQ DIFVFEQTGI
DEKGKIVGHL RPTGVRPRFL EKFEALNIFL PPTIFGASER FSF