Gene Cagg_3000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_3000 
SymbolrpsM 
ID7266531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp3668758 
End bp3669138 
Gene Length381 bp 
Protein Length126 aa 
Translation table11 
GC content54% 
IMG OID643567822 
Product30S ribosomal protein S13 
Protein accessionYP_002464296 
Protein GI219849863 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0099] Ribosomal protein S13 
TIGRFAM ID[TIGR03631] 30S ribosomal protein S13 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.947306 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00676335 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCACGTA TCGCCGGGGT TGATATTCCC CGCAACAAGA AGATCGAAAT TGCAATCACA 
TACATCTACG GTATCGGTCG CTCGAATGGT ATGGACGTTC TGCGGAAGGC GAACGTTGAT
CCCAATCGCC GAGTACGCGA TTTGACCGAA GAAGAAGTAG GCCGGATCCG CGAGATTATC
GACCGTGAAT ACCGAGTTGA AGGTGATCTC CGCCGTGAAG TGCAGTTGAA TATCAAACGT
CTGATGGATA TTGGCTGCTA TCGCGGTTTG CGCCATCGCC GCGGTATGCC GGTGCGTGGT
CAGCGCACAC GTACTAATGC GCGTACCCGT CGCGGGCGTC GCGGTCAGGC GATCGGTATT
AAGAAGAAGG TAAAGAAGTA G
 
Protein sequence
MARIAGVDIP RNKKIEIAIT YIYGIGRSNG MDVLRKANVD PNRRVRDLTE EEVGRIREII 
DREYRVEGDL RREVQLNIKR LMDIGCYRGL RHRRGMPVRG QRTRTNARTR RGRRGQAIGI
KKKVKK