Gene Cagg_2982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_2982 
Symbol 
ID7266513 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp3654393 
End bp3655856 
Gene Length1464 bp 
Protein Length487 aa 
Translation table11 
GC content54% 
IMG OID643567804 
Producttype II secretion system protein E 
Protein accessionYP_002464278 
Protein GI219849845 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.330952 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00479532 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCACTGC TTAAACGTCT TACCGGTAGT CCGCCTCAGC CCGAGCCTGC TTCGGCTGTT 
GCCACCCCTT CTCCACCGGC AGCGTCTGCC GTGACCCCGG CTCCGGTCCC GCCTCCGCCG
GTAGCTTCTA CCCCGGCCCC GGCGCGTCCA ACCGTCCAAG ATGCGACTCC GGCTAACGAC
CAGAAGCGGA TGCTCGAACT GTCACTCTGG ATCGTTGACC GTATTCAAGC GTCGCTCGGT
AGCCAGACTG AATTAAAGCG TTCGCCAGAC ACCGAACGCC TATTGCAGGA ACGGTTTGCG
CGGATCTATC AGCAGGCTAA TGTGAACCTT CCCGATCAAG ATGTCAAGAA ACTCTTCGCA
ATGGTGTGCG ATGAGTTGTT CGGTTTTGGC CCATTACAAC CGTTGCTCGA TGACGATAGT
ATTTCTGAGA TTATGGTCAA CGGGCCTCAC AAAGTGTATA TCGAGCAGAA GGGTAAGCTG
AAACTCTCGG ATGTGCGGTT TGCCTCCGAT GAGCACGTGA TGAAAATAAT CGACCGCATT
ATTCGTCCAC TTGGTCGTCG TATCGACCGT AAGTGGCCAA TGGTCGATGC CCGCTTACCC
GATGGTTCGC GTGTTAATGC GATTATCCCG CCGTGTGCGA TTGATGGGTC GACGATCACG
ATTCGTAAGT TCTCGAAGAA TAAGCTTAAG GTCGAAGACC TGATTCGCTT TGGTTCAATG
ACCGCCGAGA TGGCCGAGTT CTTGCGCGCC TGCGTGGTCT CACGGTTGAA TATTGTGGTG
GCCGGTGGTA CCGGTTCAGG TAAAACAACC TTGCTTAACG TGCTGTCGAA CTTTATCCCT
GAAGATGAGC GGATTATCAC GATTGAAGAT AGTGCTGAGT TGCAGTTGGC TCAAGATCAC
GTGGTACGCC TCGAAGCAAA ACCACCGGAG ATCGATGGTT CTGGTCGGGT GACGATTCGT
GATCTGGTGA TTAACTCGCT GCGTATGCGC CCCGAACGGA TCGTAATCGG TGAGTGTCGT
GGTGGTGAGA CCCTCGATAT GCTACAGGCA ATGAATACCG GTCATGACGG TTCACTCACT
ACCCTCCACG CCAATACGCC ACGCGATGCA ATCGCCCGTA TGGAGACGAT GTCGCTAATG
GCCGGTATGG ATATGCCGCT GCGCGTGATT CGTGAGCAGA TTGCCTCGGC TATTGACCTG
ATCGTGCAGC AAACCCGGTT GGAAGACGGT TCACGTAAGG TAGCCTACAT TACCGAAGTG
CAGGGTATGG AGGGTGATAC TGTTGTCTTG CAAGATATCT TTAAGCTGGA GATATTGGGC
AAGACGCCGG AGGGCAAAAT CATGGCCGAA TTGCGTCCTA CCGGTGTCCG GCCTAAGTTT
ACGCCTCGCC TCGAGGCGCA CGGCTTCAAG TTGCCGCCAA GTATCTTCGG TGCGCAAATT
CCGGGTCAGC GTGGTCGGTT TTAG
 
Protein sequence
MSLLKRLTGS PPQPEPASAV ATPSPPAASA VTPAPVPPPP VASTPAPARP TVQDATPAND 
QKRMLELSLW IVDRIQASLG SQTELKRSPD TERLLQERFA RIYQQANVNL PDQDVKKLFA
MVCDELFGFG PLQPLLDDDS ISEIMVNGPH KVYIEQKGKL KLSDVRFASD EHVMKIIDRI
IRPLGRRIDR KWPMVDARLP DGSRVNAIIP PCAIDGSTIT IRKFSKNKLK VEDLIRFGSM
TAEMAEFLRA CVVSRLNIVV AGGTGSGKTT LLNVLSNFIP EDERIITIED SAELQLAQDH
VVRLEAKPPE IDGSGRVTIR DLVINSLRMR PERIVIGECR GGETLDMLQA MNTGHDGSLT
TLHANTPRDA IARMETMSLM AGMDMPLRVI REQIASAIDL IVQQTRLEDG SRKVAYITEV
QGMEGDTVVL QDIFKLEILG KTPEGKIMAE LRPTGVRPKF TPRLEAHGFK LPPSIFGAQI
PGQRGRF