Gene Cagg_2674 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_2674 
Symbol 
ID7269581 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp3276395 
End bp3276904 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content55% 
IMG OID643567500 
Product16S rRNA processing protein RimM 
Protein accessionYP_002463978 
Protein GI219849545 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.109453 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000299021 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATGATC TGCTCTACAT AGGTGTACTC GGTGCGCCAT TTGGCGTTCG GGGTCAGATT 
AAACTACACT CGATCTCAAG TCATCCCGAA CACCTGATCC GACATTTGCG CACGGTATTT
ATCGGCCCCA AGCGCATTCC GCATCAGGTG ACGCGCCTCT TTTTGCATAA ACCGGGTTTG
CTGATTATCC AGTTGCAGAG CGTGACCGAC CGCGATGCGG CGTCCGATCT GCGGGGGGCT
GAGGTCTATA TTGCTGCGGC CGATGCCGCG CCACTCGGTG AAGATGAGTT TTTCTATCAC
GATCTCATCG GGTTGGCTGC TGTTACCGAT ACCGGTGATC TGATTGGCGA GGTACGCGAT
GTGCTAGAAA CCGGTGCCGG TGAAATCGCT GTGATTGCAC GTCGTGGTCG CGCTGATGCG
TTGGTGCCGA TGGTGCGCGA CTTTATCGTC GCTATCGATC TGGTCGAGCG TCGGTTGGTG
ATTCGGCCAA TTGATGGTCT GCTTGACTAA
 
Protein sequence
MDDLLYIGVL GAPFGVRGQI KLHSISSHPE HLIRHLRTVF IGPKRIPHQV TRLFLHKPGL 
LIIQLQSVTD RDAASDLRGA EVYIAAADAA PLGEDEFFYH DLIGLAAVTD TGDLIGEVRD
VLETGAGEIA VIARRGRADA LVPMVRDFIV AIDLVERRLV IRPIDGLLD