Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cagg_2674 |
Symbol | |
ID | 7269581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chloroflexus aggregans DSM 9485 |
Kingdom | Bacteria |
Replicon accession | NC_011831 |
Strand | + |
Start bp | 3276395 |
End bp | 3276904 |
Gene Length | 510 bp |
Protein Length | 169 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643567500 |
Product | 16S rRNA processing protein RimM |
Protein accession | YP_002463978 |
Protein GI | 219849545 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.109453 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000299021 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGATGATC TGCTCTACAT AGGTGTACTC GGTGCGCCAT TTGGCGTTCG GGGTCAGATT AAACTACACT CGATCTCAAG TCATCCCGAA CACCTGATCC GACATTTGCG CACGGTATTT ATCGGCCCCA AGCGCATTCC GCATCAGGTG ACGCGCCTCT TTTTGCATAA ACCGGGTTTG CTGATTATCC AGTTGCAGAG CGTGACCGAC CGCGATGCGG CGTCCGATCT GCGGGGGGCT GAGGTCTATA TTGCTGCGGC CGATGCCGCG CCACTCGGTG AAGATGAGTT TTTCTATCAC GATCTCATCG GGTTGGCTGC TGTTACCGAT ACCGGTGATC TGATTGGCGA GGTACGCGAT GTGCTAGAAA CCGGTGCCGG TGAAATCGCT GTGATTGCAC GTCGTGGTCG CGCTGATGCG TTGGTGCCGA TGGTGCGCGA CTTTATCGTC GCTATCGATC TGGTCGAGCG TCGGTTGGTG ATTCGGCCAA TTGATGGTCT GCTTGACTAA
|
Protein sequence | MDDLLYIGVL GAPFGVRGQI KLHSISSHPE HLIRHLRTVF IGPKRIPHQV TRLFLHKPGL LIIQLQSVTD RDAASDLRGA EVYIAAADAA PLGEDEFFYH DLIGLAAVTD TGDLIGEVRD VLETGAGEIA VIARRGRADA LVPMVRDFIV AIDLVERRLV IRPIDGLLD
|
| |