Gene Cagg_2651 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_2651 
Symbol 
ID7269557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp3246081 
End bp3248042 
Gene Length1962 bp 
Protein Length653 aa 
Translation table11 
GC content53% 
IMG OID643567476 
Productputative PAS/PAC sensor protein 
Protein accessionYP_002463955 
Protein GI219849522 
COG category[T] Signal transduction mechanisms 
COG ID[COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCTTG ATCCCTCATC GATGTCCAAT AATAGCCTGC TATCCGAGCG CCTGCTCGCG 
ACGATAGAAC GAACCTCGCT TCTCGTTACT GAAACTGATG CACAGGGTGT GATCACCTTC
GTTAACCCGG CGGCCCAACG CTTTTTCGGA TATACTCCTG CCGAATGTAT TGGCAAGACG
GTACTTGAGT TGACCCATCC CGCTGACCGT GATCGTTTGC AGCAAACAAT TATCGAGTGC
GTGCGTGATG GTCGGCACCT GGCTGAGATT GAGAACCGGA TACTGCATCG CGATGGCTCG
GTGTTTCATT TCCTTTGGTC GGTAGCGATC CACTATAGCG ATCAAGGAAC TATTATCGGT
TTTACCTCGA TTGGGCAAGA TATATCGGCC TTACACCAGC TGCGCAGCGA GCTGTACGAG
AAGCGCGAGA TGTTGTATAC AGTCATCGAT CATTTACCAC TCGGCGTGTT TTGGAAGGAT
AAAGAATCGC GCTTTCTCGG CTGCAACCGA CGTGTCCTGG AAGATTCGGG TCTGAGCAGC
TTTAAAGACA TTATCGGCAA GACCGACTTT GAATTGCCGT GGCGTCGACA AGCAACCTAC
TATCAGTACA GTGACCGCGT GGTGATGGCC TCTGGTCCGC AGACGAATAT TGAAGAGACG
CTCGTCCGCG GTGACGGGAG GCAAATTTGG ATCCGCACAA CAAAGCTGCC CTTGCGTCGT
CAGGGTGAAG TGATCGGTGT GCTCAGTTTT TATGAAGATA TTACCGAACA ACGTCAGCAA
AACGAATATC TGCGCACACT CCGGTTACTG GTGGAAAATG CTCCTGACGG GATCGGTATC
GTTGATCCGG ATTTGCGGCT GACCTACACC AACCAGGCTT TTATCGAGCT ACTAGGCTAT
GAGCAATTGG TCGGTATAGG GTGGCCCGAT CTAGTTCACC CTGATGATCG CGAACACCTT
GTCCACATGG TGCGACGGGC GACAACTGGG GAAGCTGCGC ACGGTACCTT GCGCTACCTG
CGCCGCGATG GGTCGTTCTT AACGGTGCAA GTAGCGATTC CGGTGTTACG CGACCGTACC
AACAAACTGA TGGGTTTTGG TGTCATCAAT CACGATCTGA CGGAACAACT CGAGGCGATG
GCCCGTTTGC AGGCGAGCGA ACAGCAGCAG CGAGCGTTGT TGCAAGCTTT GCCCGATTTG
ATGTTTTTGC TCAGTCGCGA CGGGGTGTTC TTGCAGTACA AAGCCGATGG TAGTGATGAA
CTAGCTGTGC GGCCAGAAGT CTTTCTCCAT CGCCGTTTTG ATGAAGTATT ACCACCCGTA
CTCGCTGAGC TGACGCGGCA CCATCTCGAG ATCGTGAACC AAACCGGTCA GCCGCAGCGC
TACGAATATC AATTGGAGAT AGGTGGCGAG TTGCACGATT ATGAAGCGCG TATGCATCCG
AGCGGTGATA ATGTGTTGGT ACTGGTGCGT GATATAACCG AGCAGCGCCG CGCCGAACGT
GAGCGACAGA CGTTGATACT GCAAGAGCAG ATCATTCAAG CTCAACTTGT GGTGCTGCGT
GAGTTGAGCA CACCGCTGCT CCCGATTGCC AATGGCGTGG TCGTGATGCC GCTGATCGGA
ACCATTGACT CATCACGTGC GCAACAGGTG ATGGAGACTT TACTCGATGG AGTTAATCGG
TATCAGGCAA CGGTAGCCAT CATTGATATT ACCGGCGTGA AGGTCGTTGA TACGCAAGTC
GCCGGTGCTC TGATCCGCAC TGCACAGGCG GCGTCCTTGT TAGGCGCACA GGTGGTGTTG
AGTGGGATCA ATCCTGAGAT TGCGCAGACG TTAGTGCAGC TTAGTATTGA TCTCGCCGGT
ATCGTAACCA AGGCAACGTT GCAAGATGGT ATTGCGTATG CCTTGAGCCG ACAACAGTTG
CGCACTCGTC CTGTTCCGAC GGCGCTGAAG ATGGTACGAT AG
 
Protein sequence
MHLDPSSMSN NSLLSERLLA TIERTSLLVT ETDAQGVITF VNPAAQRFFG YTPAECIGKT 
VLELTHPADR DRLQQTIIEC VRDGRHLAEI ENRILHRDGS VFHFLWSVAI HYSDQGTIIG
FTSIGQDISA LHQLRSELYE KREMLYTVID HLPLGVFWKD KESRFLGCNR RVLEDSGLSS
FKDIIGKTDF ELPWRRQATY YQYSDRVVMA SGPQTNIEET LVRGDGRQIW IRTTKLPLRR
QGEVIGVLSF YEDITEQRQQ NEYLRTLRLL VENAPDGIGI VDPDLRLTYT NQAFIELLGY
EQLVGIGWPD LVHPDDREHL VHMVRRATTG EAAHGTLRYL RRDGSFLTVQ VAIPVLRDRT
NKLMGFGVIN HDLTEQLEAM ARLQASEQQQ RALLQALPDL MFLLSRDGVF LQYKADGSDE
LAVRPEVFLH RRFDEVLPPV LAELTRHHLE IVNQTGQPQR YEYQLEIGGE LHDYEARMHP
SGDNVLVLVR DITEQRRAER ERQTLILQEQ IIQAQLVVLR ELSTPLLPIA NGVVVMPLIG
TIDSSRAQQV METLLDGVNR YQATVAIIDI TGVKVVDTQV AGALIRTAQA ASLLGAQVVL
SGINPEIAQT LVQLSIDLAG IVTKATLQDG IAYALSRQQL RTRPVPTALK MVR