| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_2400 |
|---|
| Symbol | |
|---|
| ID | 7267228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | - |
|---|
| Start bp | 2917332 |
|---|
| End bp | 2918894 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643567226 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_002463709 |
|---|
| Protein GI | 219849276 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.38799 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCGA CCAACGAGCT TCAATTTATG CCCCTCGACC TCGATACCTT CAGCGGTAGC
GAGCGCTTCA TGAGCGGCAC CCGCCTAGGG GCAGCGTTCA GTCAAGGAAT GCGTTCCTAC
CTACGCGCGG CCTACGCCGA TGCGATCGAG CATTTCAAGG CTGCTCTCAT CGCCGCCTAC
GTTGATGGGG AAGAGCAAGC CCAGATTTAC GAGCGCGAAC GGGCAATTAT CTATCTCTAT
ATCGGCAACT CACTCGCCTT CCAAGATCAT TGGGAAGAGG CACTGCGCGA GTATCTCGAA
GCGGTACAGA CCGATCCGCA ATTAGCTGAG GCCCACTACA ATCTCGGCGT CGCCTTTGCC
GCCCTCGGCC AAATCGACCG AGCCATCGCC GCCTTCAAAG AGACGCTCGA ACACAACCCC
AACCTCTACG AGGCCCATTT CGCGCTTGGT CGCTGCTACC AACGCATCGA CGATGCCGGT
CGGGCGTATA TTCACTTCAG TAGCGCCTGC AACGCGCGCC CACAAGCTGC CGAGCCACGT
TACTACATGG GCTTGATGCA CCAAAGTCAC GGCGCGCACG AGCTTGCACA ACGGTGCTTT
GCCGAAGCGC TGCGCGTTGA ACCGACGTTT GTCTCACCCG AACCATTACC CGACGAGCCG
CTCGTCAACC GTAGCGAAGA AGAGGTGGCC CAGTGGTATT ACCGGCTTAG CCAGGCCCTC
AAGCAACAAG GATATGAAGA AGAGGCCGAG CGGATCTACC GTGCTTTACT CCAATGGCGC
CCCCAAGAGT ATGCTGCCCG TTATCTCCTG GGGAACCTCC TGGCCCGTCA ACGTCGGTTT
GACGAAGCCT ACGCCGAATA TGAGCAAATA CCACCGCAAC ATCGCCATTA TGTCGATGCA
CGTCTCCGCA TGAGCGCCAT CTTGCGTTTG CAAAAGAAGC CCAAACAGGC CTACGAAATC
CTTTTCGCCT GCGCCCGGCT TAATCCGCAC CACGGCCAGC TCTTCTTGCA GATGGGCAAA
CTCCTTTACG ATATGGGAAT GACCAGGCAA GCGGTCCGTG CCTTCGAGCG AGCCGTTCAA
TTGCTCCCGA CCGATGCTCA AGCTCATTAC CTCCTTGGAT TTGTGTACAA TACGATGGGG
CGCGACACGT GGGCACTCGC TGCTTGGCGC AAAGCCGTGC AGCTTGCCCC TGATGCGCAT
TCACTACGCT TTGATCTTGG CTACATGTAT ATCCGGCGTG GGCGATACGA TCTTGCAGCG
AAAGAGTTCC AGCAAGTACT CGAACAGTGG CCCGACGATA TAGAAACGCA GTTCATGCTC
GGATTATGCT ACAAAGAGCT GCTCGAACCG TCGCGCGCTA TCCCACTGTT TGAAAAGGTG
CTTCGCCGCA ATCCACGTCA CGCTCAGGCT CTCTACTACC TGGGTGCATG CTACCTCCAA
GTCGGCAACA CCTCTCTCGG CAAGGCGTAC CTGCGTCGGT ACGATCATCT TATCCGTCAA
ACCGAAACAA CGAACGGCAG TCGGTCGCGA TCACTACCCA AACCACAGTT GTCTTCACCA
TAA
|
|---|
| Protein sequence | MASTNELQFM PLDLDTFSGS ERFMSGTRLG AAFSQGMRSY LRAAYADAIE HFKAALIAAY
VDGEEQAQIY ERERAIIYLY IGNSLAFQDH WEEALREYLE AVQTDPQLAE AHYNLGVAFA
ALGQIDRAIA AFKETLEHNP NLYEAHFALG RCYQRIDDAG RAYIHFSSAC NARPQAAEPR
YYMGLMHQSH GAHELAQRCF AEALRVEPTF VSPEPLPDEP LVNRSEEEVA QWYYRLSQAL
KQQGYEEEAE RIYRALLQWR PQEYAARYLL GNLLARQRRF DEAYAEYEQI PPQHRHYVDA
RLRMSAILRL QKKPKQAYEI LFACARLNPH HGQLFLQMGK LLYDMGMTRQ AVRAFERAVQ
LLPTDAQAHY LLGFVYNTMG RDTWALAAWR KAVQLAPDAH SLRFDLGYMY IRRGRYDLAA
KEFQQVLEQW PDDIETQFML GLCYKELLEP SRAIPLFEKV LRRNPRHAQA LYYLGACYLQ
VGNTSLGKAY LRRYDHLIRQ TETTNGSRSR SLPKPQLSSP
|
|---|
| |