Gene Cagg_2312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_2312 
Symbol 
ID7266725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp2815537 
End bp2816079 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content68% 
IMG OID643567142 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_002463627 
Protein GI219849194 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.092004 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATTCCC CTACTCATTC CACCATCGTG ACCGGGCTTC GACAGCGCGA CCCGCAGATT 
ATCGGCTGGC TCTACACGAC CTACGCCCCG CGCCTCATTG GCTACTTCAG CCGTCGCCTG
CGCGACCCCG ACCTCGCCCG CGACCTGCAC CACGAATTGT TCCTGCGGCT GCTCGAACGC
GCCCCCACCT TCACCGACCG GGGCGTGCCC ATCGAGGCGT GGCTTTTTCG CCTCGCCCAC
GACCTCGTCG TCGATACCCA CCGGCGTGCC GGGCGGACCG TCCCGCTGAC CGAGGCCGCG
CATCCTGCCG CCGACGACGA TGTCACCATC ACCTGCCTCC ACGCCGCCGA CCAGGCTGCG
CTCCACCAGG CCCTCACCAC ACTGCCCCTG ACCTATCGGC GCGTGCTTAC CTTGCGCTTT
TGCGACAACT GCTCGCTCGC CGATACCGCG CTTCAGCTCG GTCTCTCCCT CTCGGCCACT
AAGGCCCTCC AACGTCGCGC CATCGCTTGC CTCCGCGCTC TCCTCTCCCC GCCGATGGCG
TGA
 
Protein sequence
MHSPTHSTIV TGLRQRDPQI IGWLYTTYAP RLIGYFSRRL RDPDLARDLH HELFLRLLER 
APTFTDRGVP IEAWLFRLAH DLVVDTHRRA GRTVPLTEAA HPAADDDVTI TCLHAADQAA
LHQALTTLPL TYRRVLTLRF CDNCSLADTA LQLGLSLSAT KALQRRAIAC LRALLSPPMA