Gene Cagg_1628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_1628 
Symbol 
ID7268929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp1987269 
End bp1988378 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content55% 
IMG OID643566469 
ProductNADH dehydrogenase I, D subunit 
Protein accessionYP_002462965 
Protein GI219848532 
COG category[C] Energy production and conversion 
COG ID[COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 
TIGRFAM ID[TIGR01962] NADH dehydrogenase I, D subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.963572 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.66391 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCCAGA CTCAAGAGCT GCAAGTCAAT ATTGGGCCGC AACATCCGTC AACCCACGGT 
GTGTTTCGTA TGTTGGTAAC GGTTGACGGT GAGACGGTGG TTGATCTGAA ACCGGTGTTC
GGTTATCTGC ATCGTAACCA CGAGCAGATC GCCGAGGCTA ATTCATATCT GCAAAATATG
CCCTATACCG ACCGGCTCGA CTATTTTAAT TCCATGGCGA ACAATCACGC CTATGCGATG
GCGGTCGAGC GGTTGGCCGG GATCGAAGTT CCTGAGCGGG CTGAGTACAT CCGGGTGTTG
ATGGTTGAAC TGACCCGTAT TCTGAATCAC GCGAGTGCGG TCGGCTTTAT GATCAACGAT
ATGGGGGCAT GGCAAACGCC GCTGGCCTTC GGTATGCGCG AACGTGAGAA GATTCTCGAT
CTGTTTGAGA TGGCGAGCGG TGCCCGGTTG ATGTGCAACT ACTTCCGCTT CGGTGGGGTC
GTGCGCGATT TGCCCCCAGA ATTCATCCCC AACCTTCGCG AACTGCTGCG TGCCCTCCCG
GCATATATCG ACGAGCTAGA GCGATTGTTG CGCGACAACG AGATTTTGTT GCAACGCGCC
GTGGGGATCG GCATTTTGCC ACCCGAAGTG GCCCTGTCGT ATGGGGTGAG TGGCCCGGTG
CTGCGTGGTT CGGGTATTCC CTACGATGTA CGTAAAGCCG AGCCGTACAG TGTCTACGAC
CGGTTCGATT TTGATATTCC TATTGGGAAG GTTGGTGATG TCTACGACCG CTTTCTGGTG
CGGATCGAAG AGATGCGCCA GAGCAAGCGA ATCATCGAGC AGGTGCTCGA GCAGTTACCC
GATGCCAAGG GTGGGCATAT TAATCCGAAA GCACGCCAGA ATGTCCGTCC GCCGGTTGGC
GATGCCTACG CCCGTATCGA GTCGCCGAAG GGTGAGCTTG GTTTCTACCT GGTCAGCGAT
GGGAGTACGC GACCGTACCG TTACAAAGTG CGCGCACCGT CGTTCATCAA TCTGACGCCG
CTGGCCGATA TGTGTCGTGG CTACAAAGTT GCCGATATTG TCGTCATCCT TGGCAGCATT
GATATTGTGA TGGGGGAGGT GGATCGATGA
 
Protein sequence
MLQTQELQVN IGPQHPSTHG VFRMLVTVDG ETVVDLKPVF GYLHRNHEQI AEANSYLQNM 
PYTDRLDYFN SMANNHAYAM AVERLAGIEV PERAEYIRVL MVELTRILNH ASAVGFMIND
MGAWQTPLAF GMREREKILD LFEMASGARL MCNYFRFGGV VRDLPPEFIP NLRELLRALP
AYIDELERLL RDNEILLQRA VGIGILPPEV ALSYGVSGPV LRGSGIPYDV RKAEPYSVYD
RFDFDIPIGK VGDVYDRFLV RIEEMRQSKR IIEQVLEQLP DAKGGHINPK ARQNVRPPVG
DAYARIESPK GELGFYLVSD GSTRPYRYKV RAPSFINLTP LADMCRGYKV ADIVVILGSI
DIVMGEVDR