| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_1613 |
|---|
| Symbol | |
|---|
| ID | 7268179 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | + |
|---|
| Start bp | 1967134 |
|---|
| End bp | 1968918 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643566454 |
|---|
| Product | VanW family protein |
|---|
| Protein accession | YP_002462950 |
|---|
| Protein GI | 219848517 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2720] Uncharacterized vancomycin resistance protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0632012 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.156067 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCGCA TCCTTGAGTG GCTACTGGTA CTGTGTACAT TGGCCGGGCT GGTTGCTGTC
ATTGGCTATG GCATGCTCCT GTTCGGCAAT CAAGTATTTG CCGAACGCAT CTATCCCAAC
ATTAGCGTGC GCGGGTTACC AATTGGTGGT ATGACACGGG CGGAAGCACG CACGGCCCTC
CAACGTCGCT ACGCCGATTT CTTAGCCGCG CCGGTAACGC TCAGCTTCGA TGGGCAACTC
TGGCGACCGG CAGCCGAAGA CCTTGGCCTC AGTTTGGCCA TTGATGAGGC ACTCGACACT
GCTTTTGCAC TCGGTCATCA GCCCGATTGG GAAGCTAATC TCCGTCTCGC TGCAGCAACG
TGGCAACACG GGATTGATTT GCCTTTGCAC CTGCAATTTG ATCAGCGCGT AGCCCAGATC
ACGCTGCGTG CTATCGCTGC CGAAATCGAT CGAGCACCTA TCGATGCCAG TGTCGAGCTG
CGCAACAATA TTATCATTGT CGGTACTGAA CAGTGGGGTC GCCAAACCCT TATCGATGAA
ACTATCGCCG ATATTGCCGC CGCCGTACAG AGTCTCCAGC CCCAAGAAGT ACCGATTCGT
ACCAGACAGC TCGAACCACG AGTACGCGAC ACCGATCTTG CACCAACGGT CACCGAGCTT
CGTCTCCTAC TTAGTGGCCC GATTTGGCTA GAGGGACGTG GCGGTCAATG CCCAAACGGA
TGCCGTTGGG AATGGCCTGT CACCCAGATC GCGACGTGGA TCAAACTACG CAATCTGACG
GCCGTCGATG GCCGCCCGGC AGTGGCCGTT ATGGTGGACC AAACGGCGAT CCGCGCAGCA
CTCACTCCTA TCGCTACGGC TCTGCGGGAA GAAGGTGGCC TACCGCGAGT TGACTGGAAT
AACGGAAATC CACGTATTCG CACCCCCGGC ACACCCGGCC GTGGCCTTGC CGTCGAAGAA
GCGCTGGCCC GCATTAATGG CGCCCTCTAC GGCAACGAAC GCACTATCCT CCTCCCCATG
CGCGAATTGC CACCACCGGT AAACCCTGAT AACCTTGCTG CACTCGGTTT GAGCGAACCG
GTCGGGATCG GGATCAGTTC GTTCCGTGCC TCTGCTGAAT ATCGGATCAC CAACATTCTG
GCCGGCGCTC GGCAGATGGA TGGTGTCCTG ATTCCACCCG GTGCCACCTT TTCGTTTAAT
ACGACGCTTG GTCCGGTGAC CCCCGAACGT GGCTTTGTAG AAGGTTTGGC GATCGTTGAC
AATCGCACCC AGAAAGAGTG GGGTGGTGGC CTTTGCCAGG TAAGTACTAC CGTTTTTCGC
GCTGCATTCT TCGCCGGTTT ACCGATCAGC GAGCGTCACG CCCACTCATT CCGCATCAGT
TGGTATGAAG AACTTGGTGA ACCACCCGGT CTCGACGCGG CAATCTTCAC CGGTGTGCAT
GATCTGCGCT TCGTGAATGA TACTGGCGGC TGGCTTCTCC TCACCAGCAA GGTCGATCTG
CGTCGCCAAC AATTAACGAT GATCTTGTAC GGGCCGCCGA GTAACCGCCG GGTTGAATAC
TCGTACCGTA TTCTTGAGCG CACACCAGCT CCTACTCAAC CATTGTATAT CGACGATCCT
TCCCTCCCAT CTGGCGTTAT CCGCCAAACC GACACAGCCC GCGGTGGTCT GCGGGTCGAG
ATCTATCGGA CGGTGTACAC CAATGGCGAA GTCAGCCTAC GAGACACCAT CCCGACCACC
TTCCAGCCGT GGCCTAACAT CTTTGTGCGT GGTACCGGTC GGTAA
|
|---|
| Protein sequence | MWRILEWLLV LCTLAGLVAV IGYGMLLFGN QVFAERIYPN ISVRGLPIGG MTRAEARTAL
QRRYADFLAA PVTLSFDGQL WRPAAEDLGL SLAIDEALDT AFALGHQPDW EANLRLAAAT
WQHGIDLPLH LQFDQRVAQI TLRAIAAEID RAPIDASVEL RNNIIIVGTE QWGRQTLIDE
TIADIAAAVQ SLQPQEVPIR TRQLEPRVRD TDLAPTVTEL RLLLSGPIWL EGRGGQCPNG
CRWEWPVTQI ATWIKLRNLT AVDGRPAVAV MVDQTAIRAA LTPIATALRE EGGLPRVDWN
NGNPRIRTPG TPGRGLAVEE ALARINGALY GNERTILLPM RELPPPVNPD NLAALGLSEP
VGIGISSFRA SAEYRITNIL AGARQMDGVL IPPGATFSFN TTLGPVTPER GFVEGLAIVD
NRTQKEWGGG LCQVSTTVFR AAFFAGLPIS ERHAHSFRIS WYEELGEPPG LDAAIFTGVH
DLRFVNDTGG WLLLTSKVDL RRQQLTMILY GPPSNRRVEY SYRILERTPA PTQPLYIDDP
SLPSGVIRQT DTARGGLRVE IYRTVYTNGE VSLRDTIPTT FQPWPNIFVR GTGR
|
|---|
| |