| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_1529 |
|---|
| Symbol | |
|---|
| ID | 7267306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | - |
|---|
| Start bp | 1868443 |
|---|
| End bp | 1871073 |
|---|
| Gene Length | 2631 bp |
|---|
| Protein Length | 876 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643566372 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_002462868 |
|---|
| Protein GI | 219848435 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.212638 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGACAA CTGCTGCTCC AACTGCATTG GTTGAAGAGC TACGCGCCGT GCTCGGCGCA
GAAGCAGTGC TGACGACGCC GGAGGCGTTG CTGACCTACG ACTCCGATGG CAGTATGATC
GTTTCCCATC CGCCGGATAT TGTCGTGTTA CCGACCACTG CCGAACAGGT TGCAGAAGCG
GTGCGGTTGG CTAATCGTGC CGGCTTGGCA ATCGTAGCGC GTGGCGCCGG TACCGGGATT
GCCGGTGGTG CCGTGCCGCT GCGTGGTGGG CTGATGATCA GTACGGCGCG CATGGATAAA
ATCCTTGCCG TTGATACTCG TTCGCGATTG GCCGTCGTTC AGCCCGGCGT TGTTAATGCC
GATCTCAATG CCTATCTCGC GCCACTTGGC TACCAATTTG CCCCCGATCC CTCTTCGCAA
CGGGCCAGTA CCATCGGCGG TAATATCGCA ACGAATGCCG GTGGTCCGCA CTGTCTGAAG
TACGGGGTGA CGAGTAATCA CGTGCTGGCA GTCGAAGTGG TCGATCACGC TGGTTCTCGT
TACTGGACGG GTGATGGTGT GCTCGATCAG TCCGGTTACG ATCTAACCGG CCTCATGACC
GGCAGTGAAG GAACGTTGGG GATTGTGACG GCTGCTATTG TGCGCCTGAC ACCGCTGCCT
GAAGCGGTGC GCGTGGTATT GGCCCTCTTT CCATCGGTAG TGGCTGCGGC TGCGGCAGTC
AGTGCTGTGA TTGCCGCCGG TTCGTTGCCG ACGTCGCTGG AAGTGATGGA TCACAATGCG
ATCCGCGCTG TCAATAGTGC CTATAGCTTG GGTTTGCCGG AAACGACCGG CACGACGGCC
CTCATTATCG AGGTAGATGG CGTTGAAGAT GGATTAGACG ATCAGCTCGA TCAGATTATC
GCGATTTGTC GTGACCACGG CGCGTTTGAT CTGCGTCCGG CCCGCGATCC GGCGACGCAG
GCGCGGGTAT GGACGGCACG TAAGTCGGTG GCGGGTGCCA TTGGTCGCCT TGCGCCGGCG
TACTATCTCG TCGATACGGT GGTACCGCGC ACAAAGCTGC CGTTGATGAT GGAACATGTC
GAGCGGTTGC GGGCCGAGTA TGGTATGGAG GTGTGTAACG TTTTTCACGC CGGTGATGGG
AATCTCCACC CGCTCGTGCT CTACGATCCA CGTGATCCGG ATCAGCGTCG GCGTGCGCAC
GATATTGCTG CCGGTGTGCT TGAACGTAGT CTTGCCAATG GCGGCGTTGT CAGCGGCGAG
CACGGTATTG GCCTTGAGAA GTGCGAATAC ATGCCACGCT TTTTCTCACC CGCCGAGTTG
CAATTGCACG CGACAATTCA TCATGTGTTC AATCCAACCG GCTGTTTCAA CCCGGCCAAG
ATCTTTCCCA CCGATACCAC ACCGGCAGCA TTGGCCGCCG CGCGTGCTGA GCGGTTGCAA
CGGCGGGATC CGGTACACGG CGCTGCCGCG CCCGAACCCG GGGCATTCGT TGCACCGGAA
ACGCCGGCCG CTGCCGCAGT GCTGATGAAG GCTTGCTATC ACGCCGGCTT GTCGGTAATT
CCAACCGGTG GGACTATGGC GCGTTCGCCC CAAGCTGTGA CGATCTCAAC GAAGGAGTGG
CACGGGCCGC TCGTGTACGA ACCGGATGAT CTCACCATTA AGGTGGCTGC CGGTACGACG
TTGGCCGAGT TGCAAGCTTT GCTCGCGCCG CATAATCAGA TGTTGCCGCT CGATGTGGCC
GATCCTCACC GGAGCATCGG TAGCTTAGTT GCCACCGCTG CCGATGGTCC GCGCCGACTG
GGCTATGGCG CGCTTCGCGA TTGGGTGTTA GCACTCGATG TGCTCGAACC GGATGGTGAG
CCGGTGCGCC TCGGTGCTCA GGTGGTCAAA AATGTGACCG GCTACGATCT GGTTAAGCTC
TATACCGGCA GCTATGGCAC CCTCGGTCTG ATTACGGCAG TGGCCTTGAA AGTCTTTCCA
CAACCGCCTG CCGGTGCGAC GGCCATCATG ACGATGCCGA CAAGTGTTGC CGCATGTGCG
CTGATCGATG ATCTGTCCAC AACCCGTTTG CTGCCTACCG CTGTTGAATA CCTTGCCGAT
GCGGGTGCTT TCGTCGTCGC CGTGCGGGCC GAAGGTCATC CCGCTGCCGT TGAGCGCCAT
ATGCGAGAAG TGACAGAACT CGCCCACCGA CATAACGGGG CATGGACGGT GGTGGCCGGC
GCTGATGAAA CAAGCTTCTG GCAGCAGACG GTCGCCCGCT ATGGGGCAGT GACCGATCAG
ACGTTGTTGC GGCTTAGCGT CTGGCCATCC CGTTTCGCTG CTACTCTCCA GACAATCGAG
CAAGCCGCAC GCCGCCAACA CGTAGAGGTT GCTCTTACGG CACACGCGCT CAGTGGGATT
ATCTATCTGC GGGTGACCGG CGATCCGGCG GCGATAGCCG CTTATCACGC TGAGTTGTAC
CATACAATTC CCCATACCCG TCTCCTCGTT GCACCACCGC ACTTCGTGCC GCAGGTGTCG
GTATGGGGTC TATCGCCAAC CACGCTCAAC CGTGTCCGTG CGTTAAAAGT AGCAATTGAT
CCGCATAACA CGCTGAATCC AACCGCCGTT TGGTTTGCCA ATCGTACCTA G
|
|---|
| Protein sequence | MTTTAAPTAL VEELRAVLGA EAVLTTPEAL LTYDSDGSMI VSHPPDIVVL PTTAEQVAEA
VRLANRAGLA IVARGAGTGI AGGAVPLRGG LMISTARMDK ILAVDTRSRL AVVQPGVVNA
DLNAYLAPLG YQFAPDPSSQ RASTIGGNIA TNAGGPHCLK YGVTSNHVLA VEVVDHAGSR
YWTGDGVLDQ SGYDLTGLMT GSEGTLGIVT AAIVRLTPLP EAVRVVLALF PSVVAAAAAV
SAVIAAGSLP TSLEVMDHNA IRAVNSAYSL GLPETTGTTA LIIEVDGVED GLDDQLDQII
AICRDHGAFD LRPARDPATQ ARVWTARKSV AGAIGRLAPA YYLVDTVVPR TKLPLMMEHV
ERLRAEYGME VCNVFHAGDG NLHPLVLYDP RDPDQRRRAH DIAAGVLERS LANGGVVSGE
HGIGLEKCEY MPRFFSPAEL QLHATIHHVF NPTGCFNPAK IFPTDTTPAA LAAARAERLQ
RRDPVHGAAA PEPGAFVAPE TPAAAAVLMK ACYHAGLSVI PTGGTMARSP QAVTISTKEW
HGPLVYEPDD LTIKVAAGTT LAELQALLAP HNQMLPLDVA DPHRSIGSLV ATAADGPRRL
GYGALRDWVL ALDVLEPDGE PVRLGAQVVK NVTGYDLVKL YTGSYGTLGL ITAVALKVFP
QPPAGATAIM TMPTSVAACA LIDDLSTTRL LPTAVEYLAD AGAFVVAVRA EGHPAAVERH
MREVTELAHR HNGAWTVVAG ADETSFWQQT VARYGAVTDQ TLLRLSVWPS RFAATLQTIE
QAARRQHVEV ALTAHALSGI IYLRVTGDPA AIAAYHAELY HTIPHTRLLV APPHFVPQVS
VWGLSPTTLN RVRALKVAID PHNTLNPTAV WFANRT
|
|---|
| |