Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cagg_1307 |
Symbol | |
ID | 7268598 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chloroflexus aggregans DSM 9485 |
Kingdom | Bacteria |
Replicon accession | NC_011831 |
Strand | - |
Start bp | 1606139 |
End bp | 1608097 |
Gene Length | 1959 bp |
Protein Length | 652 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643566150 |
Product | alpha amylase catalytic region |
Protein accession | YP_002462651 |
Protein GI | 219848218 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000323164 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGTATGA GTGACCGGGA ATATCTATCA CGTGAGGCAG CGCGGTCGTT GGCGCGCCTA TTGCCGCGCG TGGAGCAATC GTTTACGGCT GCCGGTGGTA ATGCTGCTGA TTGGGCTGCA TTCGAGCAGC GATTGCGCCG GGAATGGCCT CGTCTGTTTG GGTTGTTGCT GAGCTTGTAC GGACACCAGT ACGACTTTTT TTACCATCTT GAACAGTTGT TAATCACGAT GGCCAACAGT TGGTACGAGC GCCCAGATTG GCTCAAGCAG CGCGATGCAG TACGCGAAGC TGATCATGAG TGGTTCCAAT CGGAACGGAT GATAGGTGGC GTACTCTATG TCGATCGCTT CTGTGGCACC CTCCATCGGC TGCGCGAGTT TATCCCCTAT TTCAATGAGC TAGGTTTGAC CTATCTGCAT TTGATGCCGT TGTTTGAAGC ACCGGCAGGC AATAACGATG GTGGCTATGC AGTCAGTAGC TACCGGCGGG TGAATTCGCA GATCGGTACT ACGGAAGAGT TGGCGGCATT GGCCCGTGAA CTTGAGTGCG CCGGTATCAG TCTGGTGTTG GATTTCGTCT TCAACCACAC CTCTGACGAA CACGAATGGG CGCAGCGGGC GCAGGCCGGT GATCCAGATT ATCAAGAGTT CTATTTCCTC TTCTCTGATC GTACTTTGCC TGATGCATAC GAGCGCACAC TACGCGAGAT ATTCCCGACG GTACGGCGCG GTAGCTTTAC GTGGCGACCC GATATGCAGC GCTGGGTGTG GACGACCTTC AACAGTTTTC AATGGGACCT CAACTATGCC AATCCAGCCG TGTTTCGGGC GATGGCTGCC GAGATGCTCT TTCTTGCTAA TCTGGGGGTG GCCGTTCTGC GGCTTGATGC GGTACCGTTC ATTTGGAAGC GGATGGGCAC CAACTGTGAG AATCAGCCGG AAGCACATCA GATTATCCAA GCGTTTAATG CGATTGCTCG CATTGCTGCA CCGGCTCTGC TCTTTAAATC AGAGGCAATT GTCCATCCTG ATGATGTCTT GAGTTATATC AGTCCGCATG AGTGTCAATT ATCGTATAAC CCACTCTTGA TGGCATTACT GTGGGAAACG TTAGCGACGC GCGAAGTAAA ATTGTTAGCT CACTCACTGA GCCATCGCTT CCGGTTACCG GCGGGTTGTG CGTGGATCAA CTATCTCCGT TCACACGACG ACATTGGCTG GACGTTTGAT GACAACGATG CGCGTGCGGT TGGGATTGAT CCGTGGGGCC ACCGTCAGTT TCTCAACGCT TTCTATACCG GGCGTTTTCC CGGTTCGTTT GCTCGCGGTT TACCATTCCA AGAAAACCCT GATACCGGTG ATGCGCGTGT ATCGGGGACA CTGGCATCGT TGGCGGGGCT GGAACAGGCT CTCAGTAATG GTGATCCGAC CGCTATCGAG ACGGCAATCC GGCGGATTCT CTTGCTGCAC AGCGTTATCC TGAGTATCGG TGGGATTCCG CTGATCTATC TGGGTGATGA GGTAGGGACA CTCAACGATT ATGGGTATGT CAACGATCCG GCCAAAGCCG ATGACAGTCG TTGGGTGCAT CGTCCGGTAC GTAATCAAGC GGCGATGGAT CGGCGCCACG ATCCGTCAAC GGTACCGGGA CGGATTTTTA GTGAATTAGT CAAGTTGATT CGATTGCGGA CTTCGTTGCC GGCGTTGCGC GATGGTGCAA TGGAAGTTGT GCGTAGCGAT AATCGGCACG TATTGGCGTA TGTGCGGCAA ACCGGCGCTC AGCGCGTGTT GGTACTGACC AACTTCTCGG AGTATCCGCA GACCATTGCC GGTAATTTGC TACGTATGTA TGGCCCCGGT GTGGAACTGT TCGATCTGGT GAGTGATCAA CCGGTTTCGG CGAATGAAGC GCTCGTACTG CCACCGTACC GATTTGTCTG GTTGACGCCG GTGCGTTAG
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Protein sequence | MGMSDREYLS REAARSLARL LPRVEQSFTA AGGNAADWAA FEQRLRREWP RLFGLLLSLY GHQYDFFYHL EQLLITMANS WYERPDWLKQ RDAVREADHE WFQSERMIGG VLYVDRFCGT LHRLREFIPY FNELGLTYLH LMPLFEAPAG NNDGGYAVSS YRRVNSQIGT TEELAALARE LECAGISLVL DFVFNHTSDE HEWAQRAQAG DPDYQEFYFL FSDRTLPDAY ERTLREIFPT VRRGSFTWRP DMQRWVWTTF NSFQWDLNYA NPAVFRAMAA EMLFLANLGV AVLRLDAVPF IWKRMGTNCE NQPEAHQIIQ AFNAIARIAA PALLFKSEAI VHPDDVLSYI SPHECQLSYN PLLMALLWET LATREVKLLA HSLSHRFRLP AGCAWINYLR SHDDIGWTFD DNDARAVGID PWGHRQFLNA FYTGRFPGSF ARGLPFQENP DTGDARVSGT LASLAGLEQA LSNGDPTAIE TAIRRILLLH SVILSIGGIP LIYLGDEVGT LNDYGYVNDP AKADDSRWVH RPVRNQAAMD RRHDPSTVPG RIFSELVKLI RLRTSLPALR DGAMEVVRSD NRHVLAYVRQ TGAQRVLVLT NFSEYPQTIA GNLLRMYGPG VELFDLVSDQ PVSANEALVL PPYRFVWLTP VR
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