Gene Cagg_0870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_0870 
Symbol 
ID7268321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp1079230 
End bp1080669 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content59% 
IMG OID643565716 
ProductDeoxyribodipyrimidine photo-lyase 
Protein accessionYP_002462225 
Protein GI219847792 
COG category[L] Replication, recombination and repair 
COG ID[COG0415] Deoxyribodipyrimidine photolyase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.040956 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCATTC ACTGGTTCCG GCGCGATTTG CGCCTACGCG ATAATACGGC GCTGCTGGCC 
GCTGCCGATG CGAGCGGAGG GGCGGTGATT CCGGTCTTTA TCTTCGATGA TGCTATTCTG
GGCGGGCGCT TTGCTAGCCC GGCCCGTACT CAATTTTTGC TCGATAGTTT GACCGCGCTT
GATGGCGAGT TGCGTTCGTT GGGACTGCAT TTGGTGTTGC GACGCGGTGA GCCTCTCACG
ACGTTGATGG CGCTGTTGCG AGAGAGCGGT GCCCACGGGG TGACGTGGAA CCGTGACTAT
ACGCCATACG CTGTCCAACG CGATAGTACG ATTAAGCGTG AGCTGCGTGC TGCCGGCTAT
CGCGCCGAGA GTTATAAAGA CGCGGTTATC TTTGAGATGA ACGAGGTGGT GACTGCCGCC
GGTCAGCCGT ATACGGTCTA TACGCCTTAC GCCAAACGCT GGCGCGCACG CCTCGAGAGC
GAACCGGTGC GGGTGCAAGG TGTTCCTGAG CTAACGGCTA TCCCGTTGCC GGCGAGTGAT
CCCCTTCCCG CGTTGAACGA TCTCTTGCCT ACCGCGCCGA CGAGTGTGCC CCGCTTTGCT
ACCGGCGAAA CAGCAGCACG GGCCGCACTC GAACACTTCA TCCATAACGC TATTGCAAAC
TACGCCACCG CACGTGACCT TGTGGCTATC GCCGGTACGT CTCGCCTCTC ACCTTATCTG
CGGTTTGGGG TGCTCTCGCC GCGTCAGTGT GTAGTTGCAG CACGCGCCGC ACCATCCGGT
CCGGGGCCAG AGAGTTGGAT CGGCGAGTTG ATCTGGCGTG AGTTCTATAT ACAGGTGCTT
TACCATTTTC CTCACGCCCT CCGCGGTAGC TTCAAGCCGG TCTATGACCG GATTGTGTGG
CCCAACGATC CTGCCCTGTT TGCTGCGTGG CAGCAGGGTC GAACCGGTTA TCCGATTGTT
GATGCAGCGA TGCGTCAACT ACAGCAAGAA GGCTGGATGC ACAACCGCGC CCGCATGATT
GTGGCGTCGT TCTTGACCAA AGACCTGCTC ATCGACTGGC GATGGGGTGA ACGCCATTTT
ATGCATCTGC TGATCGACGG CGACCCGGCG GCAAATAACG GTGGTTGGCA ATGGGCTGCC
GGCACCGGCA CCGATGCTCA ACCCTACTTC CGTATCTTTA ACCCGGTCAG CCAAGGGCAA
AAATTTGATC CTGATGGCGC ATACGTGCGG CGTTATGTGC CGGAACTCGC CGGTGTGCCG
ACGCGCTACA TTCACGAACC ACACAAGATG CCACCGTCCG AACAGGTCCG GGCCGGCGTT
CAGATTGGGC GTGACTATTC GGCGCCGGTG GTCGATCACG CTACCCAACG CTTGCGTGCG
CTTGAACTGT ATCGATCAGC GACGCGCGCC GATGACGCTG CGGCGGAACA GTATGCTTGA
 
Protein sequence
MLIHWFRRDL RLRDNTALLA AADASGGAVI PVFIFDDAIL GGRFASPART QFLLDSLTAL 
DGELRSLGLH LVLRRGEPLT TLMALLRESG AHGVTWNRDY TPYAVQRDST IKRELRAAGY
RAESYKDAVI FEMNEVVTAA GQPYTVYTPY AKRWRARLES EPVRVQGVPE LTAIPLPASD
PLPALNDLLP TAPTSVPRFA TGETAARAAL EHFIHNAIAN YATARDLVAI AGTSRLSPYL
RFGVLSPRQC VVAARAAPSG PGPESWIGEL IWREFYIQVL YHFPHALRGS FKPVYDRIVW
PNDPALFAAW QQGRTGYPIV DAAMRQLQQE GWMHNRARMI VASFLTKDLL IDWRWGERHF
MHLLIDGDPA ANNGGWQWAA GTGTDAQPYF RIFNPVSQGQ KFDPDGAYVR RYVPELAGVP
TRYIHEPHKM PPSEQVRAGV QIGRDYSAPV VDHATQRLRA LELYRSATRA DDAAAEQYA