Gene Cagg_0836 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_0836 
Symbol 
ID7268288 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp1039349 
End bp1040812 
Gene Length1464 bp 
Protein Length487 aa 
Translation table11 
GC content54% 
IMG OID643565686 
Productputative PAS/PAC sensor protein 
Protein accessionYP_002462195 
Protein GI219847762 
COG category[T] Signal transduction mechanisms 
COG ID[COG2202] FOG: PAS/PAC domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCTGG CTGCGAATGT GGCACAGCTT ATTGAGTCAC GACGACATGC TATCGAACGA 
GATGCTGCTC AGGCTGCATT GGCCCAGAGC GAGGCTCGTT TTCGACGTTT GGCCGAGCAG
GCATCCGACA TCATCTTTCG GTACCGGTTG CAGCCCAACC CCCAACTCGA TTTTGTTAAT
CCTGCGGTAA CCAGCATCTT GGGCTATGAA CTGGACGAAT TGTTTAACCA ATTTCCGGGT
GTTCCCTCGT TTCTCGATCC TTCCCAAATT GGGCAGGTTG AACGGTTGAT CGAGCAAGGG
CGTGGGCAGC TTCTCTTGCA CACTCGCCGG CGCGACGGTA ACTATGTGTG GCTTGATCTC
CGGTTTGTGG TTGCGAACGA CGCAGTTGAG GGTATTGCCC GTGATGTGAC CGATCAGGTG
TTGGCCGCTG CGCGCCTCGT GCGTTATGAG CTGCTCAGTG CCCATACCCG TGATATTGTG
TTGTTTATTC GGGCCGGCGA TGGTCGCATT CTTGAAGCCA ATGCGGCGGC CGAACGTGCC
TACGGATATT CGCGGGCCGA ACTCTGTACT CGCACCATCT TCGATTTGCG GGCGCCGGAA
ACACACCCGT ACATTCTTGA TCAGATGCGC CAGGCGGATA CAGGGGGTGT TCTGTTTGAA
ACCCTGCATG TTCGACGCGA TGGGAGCGTG TTCCCGGTAG AAGTGAGTTC AACCGGTGCC
GATATTGATG GTGAACGGGT GTTGCTCAGT GTCATTCGTG ATATTAGCGA ACGTAAACAG
GCGCAAGCAG AACTTGATCT GTTGCGTAGG GCATTGACTG CCTCCGATCA GACGATAGTG
ATTACCGATT CTGATGGTGT GATCGAGTGG GTGAATCCGG CTTTTACGGC ATTAACCGGC
TATCGCGCTG AAGAGGCTAT TGGTCAGCAT ACCCGCATCT TAAAATCGGG TAAGCAAGAC
CGGGCATTTT ATGCCACCAT GTGGGCAGAG ATTCTGAATG GTCGGACGTG GCGTGGCACC
TTGATCAACC GCCGTAAAGA TGGTTCACTC TATCACGAAG AGCTGGCGAT TACGCCGGTG
AAGCAGGAGA ATGGCGTTAT CGCTCACTTT ATCGCCGTTA AGCAGGATAT TTCCGTTCGG
GTACAGCGTG AACAGCAACA GCGTGCCCTG ATGCAATTGA GTGCGGCAAT GCGTGTGGCT
CAAAGCTGTG CTGAATTGAT ACAGACGGTG GTGCATGAGT TGCAGGCATT GGTAGCGGCG
CAGTCGGTGG TATTCTGGCG TTTCAAGGAC GAAGGATGGC AGATCGAACA GCTTGCGGGT
GAGGCAATTC GGTTTGATTG GGTCGCCGAT CGGCTTGCCA CAGTCGGTAG CGATACGATA
CAGCGTGCGC CGACGCCACC GACCGTTTTG CCCGGCGGAG AATTGGTTAT CGTCCCATTG
ACGTGTAGTG TCTGCCCTGA ATAG
 
Protein sequence
MILAANVAQL IESRRHAIER DAAQAALAQS EARFRRLAEQ ASDIIFRYRL QPNPQLDFVN 
PAVTSILGYE LDELFNQFPG VPSFLDPSQI GQVERLIEQG RGQLLLHTRR RDGNYVWLDL
RFVVANDAVE GIARDVTDQV LAAARLVRYE LLSAHTRDIV LFIRAGDGRI LEANAAAERA
YGYSRAELCT RTIFDLRAPE THPYILDQMR QADTGGVLFE TLHVRRDGSV FPVEVSSTGA
DIDGERVLLS VIRDISERKQ AQAELDLLRR ALTASDQTIV ITDSDGVIEW VNPAFTALTG
YRAEEAIGQH TRILKSGKQD RAFYATMWAE ILNGRTWRGT LINRRKDGSL YHEELAITPV
KQENGVIAHF IAVKQDISVR VQREQQQRAL MQLSAAMRVA QSCAELIQTV VHELQALVAA
QSVVFWRFKD EGWQIEQLAG EAIRFDWVAD RLATVGSDTI QRAPTPPTVL PGGELVIVPL
TCSVCPE