Gene Cagg_0504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_0504 
Symbol 
ID7267001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp620747 
End bp622135 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content55% 
IMG OID643565367 
Productprotein-export membrane protein SecD 
Protein accessionYP_002461879 
Protein GI219847446 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000522922 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000170526 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGCAAAACC GAAATCTGTC TGCACTCATT TTGATCATTG TTGTCTTGGG ATTAGCTCTT 
GCCATCAACT TCGCCCCCAA CAACAACTTT CTTGGCCGTG ATGTCAGTGT CCGCCTTGGT
CTCGACCTGC AAGGTGGGAT TCAAGTCTTA TTGCGTGCGG CCGATCCAAA TGCCACCGCT
GAACAGATCG CTACCGCTGC CGGTGTGATC GAGCAGCGTG TCAATGCACT CGGTGTCGGT
GAAACGGTTG TCCAACGCGC CGGCAACGAC CGAATCATTG TCGAATTGCC CGGCGTCGCT
AATCCCGAAC AGGCGATTGA AACCTTACGC GGCACCGGAC GACTAGAGTT CATCGACTCG
CAAGGCCAAT ATCTGGCTGA GGGTACTATC GTCCGCACGT CAAACAGTCC TAATCCGCCG
CAATTACTCG AAACCGATAC CATAACCGAC CCCAACAGCC TTGGCCCGAT CTATCAGAGT
ATTACCGATG GCGCCGACCT TGATACGGGA GCCGTCCAAC CCACTTTCTC GCAAGGTGGC
GCGCTTGGCA GCCGCCCCGC CGTCTCGTTT GCCTTCCGTG GCGCTTCGGC TCAGCGGCTG
GCTTCGTTTA CCGCCGCTAA TGTTGGCAAA CCAATGTGCA TCGTCCTGGA TAATGTGGTG
GTGAGCTGCC CGGTGATCAA TGCAGCTCTG ACCGATGGTT CAGGCGTGAT CGAAGTGACG
ACCGAAGCCG AGCGTAATCA GATTTTTAAT AAGTTAAAGT ATGGTGCCTT GCCGGTACCG
CTGGTGGTCG AGACGAGCCG TACCGTGACC GCTACACTCG GACAAGAGAG TGTATCTGCG
AGTATTGTGG CCGGTATCAT CGGGCTATCG GTGGTCGCAA TCTTTATGAT CCTCTTTTAC
CGCGGCCCTG GCCTGATTGC GACCATCGCT TTGCTGATCT ACACGGCCAT CAGTTTCGCT
ATTTACCGAC TCATCCCGGT AACGCTCACC CTACCGGGTA TTGCCGGCTT TATCCTCTCG
ATCGGTTTGG CCGTCGATGC CAATGTGCTG ATCTTTGCGC GTCTGCGCGA AGAGTACCGC
CGCGGTCGCG ATATTCGCAA TGCGCTTGAG TTGGCGTTTG TCGAATCTTG GCCGGCTATT
CGCGACTCGA GCGTTTCAAC ATTGATCACC AGTATTGTGC TATTTATGTT CGGCAACAGC
TTCGGTGTTA GCTTGATCAA GGGCTTTGCC CTAACCCTTG GGTTGGGTAT TGTGATCAGC
CTGTTTACCG CGGTTATCGT CACCCGTACC TTTATGCGCA TAGTGTTACC GCTGTTTAGC
GATGAGCGGG CATGGTGGTT TGGTGTTGAC CGGCGCAATC CAGAAACGGC GGTAACGGCA
ATATCGTGA
 
Protein sequence
MQNRNLSALI LIIVVLGLAL AINFAPNNNF LGRDVSVRLG LDLQGGIQVL LRAADPNATA 
EQIATAAGVI EQRVNALGVG ETVVQRAGND RIIVELPGVA NPEQAIETLR GTGRLEFIDS
QGQYLAEGTI VRTSNSPNPP QLLETDTITD PNSLGPIYQS ITDGADLDTG AVQPTFSQGG
ALGSRPAVSF AFRGASAQRL ASFTAANVGK PMCIVLDNVV VSCPVINAAL TDGSGVIEVT
TEAERNQIFN KLKYGALPVP LVVETSRTVT ATLGQESVSA SIVAGIIGLS VVAIFMILFY
RGPGLIATIA LLIYTAISFA IYRLIPVTLT LPGIAGFILS IGLAVDANVL IFARLREEYR
RGRDIRNALE LAFVESWPAI RDSSVSTLIT SIVLFMFGNS FGVSLIKGFA LTLGLGIVIS
LFTAVIVTRT FMRIVLPLFS DERAWWFGVD RRNPETAVTA IS