Gene Cagg_0466 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_0466 
Symbol 
ID7266634 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp576115 
End bp578451 
Gene Length2337 bp 
Protein Length778 aa 
Translation table11 
GC content62% 
IMG OID643565329 
Product(NiFe) hydrogenase maturation protein HypF 
Protein accessionYP_002461843 
Protein GI219847410 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0068] Hydrogenase maturation factor 
TIGRFAM ID[TIGR00143] [NiFe] hydrogenase maturation protein HypF 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.252806 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0404368 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAAC AAACGATAAC CAACCCCCAG CAGCGGCGCT GGCGGATATA CGTGCGGGGC 
ATTGTACAGG GTGTTGGTTT TCGGCCCTTT GTGTTTGGGT TGGCCGAACG GTGGCAGTTG
GCCGGTTTTG TCCGTAATGA TAGTTACGGG GTGACGATAG AGATCGAGGG TGAGGAGCGT
GCCCTGCACG AGTTTGTGAC TGCACTGCAA CGCGAATCGC CGCCACTAGC CCGCATCGAG
CAGGTGAGTA TCGAACCGTT GGCGTTGGTC GGTGAGCGCG CGTTTGTGAT TGCGGCCAGT
CAAGCACAGG CCCAACGTCG CACGTTGATC GCACCGGATA CTGCTACCTG TGCTGATTGC
CTGCGCGAGA TCACCGATCC CGCCGACCGG CGCTATCGTT ATGCCTTTAC CAACTGCACC
AACTGTGGCC CCCGCTTTAC GATTGTGCTC GATGTGCCCT ACGACCGCGC CAATACCACG
ATGCGCAGCT TTGTGCTCTG CGAACGGTGT CGAGCCGAGT ACGAAGATCC GCGCGATCGC
CGTTTTCATG CCCAGCCGAC GGCTTGCCCG GTGTGCGGTC CGCAGTTGCA ATGGCTGACT
GCCGATGGTG TGTTGGCCGA ACCCGATCCG TTGCGCGCTG CGGCGGTAGC GCTGGCGCAA
GGGCAGATCG TAGCGGTGAA GGGGCTTGGC GGCTACCATC TCGCCTGCGC CGCCGATGAT
GAAGCGGCGG TGCGTCGGTT GCGTCAACGC AAGCAGCGCG AAGCGCGGCC ATTGGCCTTG
ATGACCCGCG ATCTCACCGT CGCTGCTCGA CTGTGTGTGA TCGATCCGGT TGCACAAACA
TTGCTGACCG GTCCGGCTCA CCCGATTGTG CTGATGCCGC GGCGCTCTGA TGCACCGGTT
GCGCCGTCGG TGGCGCCGGG AATGCGGACG CTAGGCGTCA TGCTACCGTA TACGCCACTT
CACCACCTGC TATTGGCCGA ATATGCCGCC GTCGTCGGGC CAACACGAGA AGCGGTGATT
GTGCTGACGA GCGGTAATCT GAGTGATGAG CCGATTGCCT ACCACGACGA TGATGCGCAG
CAACGGCTAG GGCCGATTGC CGATGCCTTT CTCACCCACA ACCGTCCCAT CCATATGCGC
TGCGATGATA GTGTAGCCAG TGTTGCTGTC GGTGGACCGC TCCTGATCCG GCGGTCACGC
GGGTATGCCC CGGCTCCGAT TACCCTGGCT GCTGAGTTGC CATGCCCGAT CCTTGCCTGT
GGCGGCCATC TCAAAAACAC GTTTGCCCTT GGTCGTGGTC GCGAAGTATT TCTCAGTCAT
CACATCGGTG ATCTAGAAAA TCTGCCGACA TTGCGCTCAT TTCACGAGGG GATTGCCCAT
TTTCAACGGC TGTTTGACAT CACGCCGGAA GTCGTCGCGT ATGACCTGCA TCCCGGCTAT
CTGGCTACCC AAGCTGCGCT GGCAATGCCG ATCGAGCGCA AGATCGGTGT ACAGCACCAC
CATGCCCACA TTGCGGCAGT GTTGGCCGAA TATGGCCATC CCGGACCGGT GATCGGGGTA
GCCGCCGATG GCAGCGGCTA CGGGCCTGAT GGGACGGTGT GGGGCGGTGA AGTGCTGGTA
GCGACGTGTG CTTCTTACGA GCGAGTAGGT CATCTGGGTC ATCTGATTCT ACCCGGCGGC
GAGCAGGCAG TGCGCCAGCC GTGGCGGGTG GCGGCGGCGG CGCTAGCTCA GCTCTACGGC
CCTGATTTCT GGCGGCTGGC ATTGCCGTTT ACCCAACAGC TCGATCAGTC AGCATGGCAG
GTACTGGCCC GGATGATTGA ACGGAACCTC AATAGTCCAC GCACCTCAAG TCTTGGCCGG
CTGTTCGATG CCGCCGCCGC ACTAACCGGA ATGGGCCAGA TTGCCCGTTA CGAAGGCGAG
CTGGCCATTC GCTTCGAGCA GATTGCCGAT CCGCAGCAGC CGCCCTATCC CATGCCGCTG
CGTGAGCCAG CCACTGCCGG CGGGCCGTTC ACGCTCGACG GATTGGCATT GCTGGCGGCG
CTGGTTGATG ATCTGCGGGC CGGGGTTGCA CCGGCAGCAA TCGCGGGCCG GGTGCATCAC
GGTGTGGCTC GGGCGCTCTT GGCTGCTTGC CGGCGTGTCC GTGAGGAGCG TGGCCTGACC
ATCGTTGCGC TCAGTGGTGG AGTCTTTCAA AATGTGCTGC TGCTGGAGAC GCTGGCCGGT
GCGCTGCAAG CCGATGGGTT TACCGTATTG ATCCCACGGC TTGCCCCGCC AAACGATGGT
GGGTTGGCGC TGGGTCAGGT GGCGGTGGCC GGTGCGCAGG TCGGCGAGCG GCAATAG
 
Protein sequence
MTEQTITNPQ QRRWRIYVRG IVQGVGFRPF VFGLAERWQL AGFVRNDSYG VTIEIEGEER 
ALHEFVTALQ RESPPLARIE QVSIEPLALV GERAFVIAAS QAQAQRRTLI APDTATCADC
LREITDPADR RYRYAFTNCT NCGPRFTIVL DVPYDRANTT MRSFVLCERC RAEYEDPRDR
RFHAQPTACP VCGPQLQWLT ADGVLAEPDP LRAAAVALAQ GQIVAVKGLG GYHLACAADD
EAAVRRLRQR KQREARPLAL MTRDLTVAAR LCVIDPVAQT LLTGPAHPIV LMPRRSDAPV
APSVAPGMRT LGVMLPYTPL HHLLLAEYAA VVGPTREAVI VLTSGNLSDE PIAYHDDDAQ
QRLGPIADAF LTHNRPIHMR CDDSVASVAV GGPLLIRRSR GYAPAPITLA AELPCPILAC
GGHLKNTFAL GRGREVFLSH HIGDLENLPT LRSFHEGIAH FQRLFDITPE VVAYDLHPGY
LATQAALAMP IERKIGVQHH HAHIAAVLAE YGHPGPVIGV AADGSGYGPD GTVWGGEVLV
ATCASYERVG HLGHLILPGG EQAVRQPWRV AAAALAQLYG PDFWRLALPF TQQLDQSAWQ
VLARMIERNL NSPRTSSLGR LFDAAAALTG MGQIARYEGE LAIRFEQIAD PQQPPYPMPL
REPATAGGPF TLDGLALLAA LVDDLRAGVA PAAIAGRVHH GVARALLAAC RRVREERGLT
IVALSGGVFQ NVLLLETLAG ALQADGFTVL IPRLAPPNDG GLALGQVAVA GAQVGERQ