| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_0357 |
|---|
| Symbol | |
|---|
| ID | 7268458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | - |
|---|
| Start bp | 443580 |
|---|
| End bp | 447854 |
|---|
| Gene Length | 4275 bp |
|---|
| Protein Length | 1424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643565225 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_002461739 |
|---|
| Protein GI | 219847306 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00127061 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATCATC CCATTGCGAT GCTCTTCATC CAGCATCATC GCATCACCGA TTGCGCCATG
AACGTCACGA CTCTCACCCT CGACCTTGCA CCTCTTGCTG ACGGCCGGTA CCACCTGCGG
CTGACCCTGC ACGACGGCCA GAGCGACACC ATCCGCGGTC CCTTCGTCGC CGGGCCGTTC
GATGCGGTGG CCTTGCGCGC CGTGGCGCTC GACCCGGCTG CGTATGGCGC AGCCTTGGGG
AGGATGCTGT TCGCCGAGGC CGCAGCGCTG GCCGCCTACC GCGAATTGTA CGCCGCGGCG
GTGAATCGGG CCGACGCGCT GCGCCTGCGG GTGCTGTTGC CCGCGGAGTT GTACGGCCTG
CGCTGGGAGA CGCTGTGTGA CCCGGAGCAC AACCAGCCGC TCGCACTCGG AAAGGTCTGG
CTGTCGCGCT ACCTCGCGGC AGACGACGTT ACGCCGCTGC GCCCCCGGCC GCGCAGCGCG
CTGCGCGCCG TCATCGCGAT TGCAGCTCCG CATGACGCCG CGCGTTGGGG TCTTGCGCCG
ATCGATGCCG CCGCCGAAAC CGCGCGGGCC CGGCAGGCGT TGGCCGAGAT CGCTGCCGAT
ACCGACGTTG TGACCGCGAC GTGGGAAGCG CTCAGCGCGG CGGTGCGCGC AGGGTGCGAC
ATCCTCTATC TGGTGGCTCA CGGCGCGCTG GTGGATCACC AACCGTGGCT GTGGCTGGTG
CATGGGGACG GGCACGCTGC CAAACAGGCC GGCGCCGATC TGGCCGCGCT CATCCGCAGT
CTTGCCCCTG ACCGCCGCCC GCGTCTGATC GTGCTGATCA GTTGTGACGG CCTCACCGAT
GACCAACCGC TGACAGCGCT CGGCCCGCGA CTGGCGCAGG CCGGCGTGCC GGCCGTGCTG
ACGGCCCACG GCGCGTTGTC ACAAGCCGCC GCCGCCGTTG CATTGCCGGT CTTCTTCACC
GAACTCAGCC GCGACGGCCA GCTCGACCGC GCCCTCACCC ACGCCCGGCT GGCCCTCCAG
CAGGCCCGCC ACTCCGCGTG GTGGGCGCTG ACCCTGCTCA ACCGGCTGAG CGATGGCCGC
CTGTGGCCCC CGGTCACGCA ACCGGCCACC GCCGCGCCGT TCCGGGTGCC CTACCAGCCC
AACCCGCTCT TTACCGGGCG CGAGCAGGAG ATCGAGCAAT TGGTCGCGAC CCTGTGCGCC
GACTCCCCCG AGGTAACGGT GATTACGCCG GTGGTGCATG GCACCGCTGG GATCGGCAAG
AGCCAACTGG CGGTAATGGT TGCCTATCAT ACCCGCGACC GTTTCCCCGG CGGCGTCTTC
TGGCTGAACA TGGCTGATGC CGACGGCATA GCCGCACAAG TGGCCGCCTG CGGCGGCCCC
GATGGGCTGA ACCTGCCCGG CTGGGCGGGG TTGGCGCTGG CGGATCAGGT GGCGGCGGTG
CGGCGAGCGT GGCAGGAGCC GGTTCGCCGG CTGCTGATCT TTGACAACCT CGAAGACCCG
CGCCTCCTTG CGGAGTGGCG GCCCGGTGTC GGCGGCGCGC GGGTGCTGGT TACCAGCCGC
AATGCCCACT GGCGGGCGAC GCTGGGGGTG GAGCATGTCG CGCTCGCGCC GTTGTCCCGC
GCCGACAGCC GCCGGTTGCT GCTCCAACCG CGCGCGCAGG CGCAGCGCAC GGCGGTGGAT
AGCTTGCTGG CCGATCCGGC CACCGCAGCG GAGGCCGATG CGATCTGCGA GCAGCTCGGC
GACTTGCCGC TGGCACTGGC GCTGGCCGGG GCCTACCTCG AAGACCTGCC GAACCTGCCA
CTGGCCGCCT ACCGCCAGCA GCTTGCCCAA ACCGTGCTGA GCAACGAGTC GCTCAGCGAT
GAACTGGCGA AGGTAGCACT CTTGCCTACC CACTATCCGC GTGGTGTTGC CGCGGCTATC
CAGCTGAGCT ACGACCGGCT CGACCCGCAG CGCGACGCTC AAGCGCGGGC AGTGCTCCAC
CGGCTGGCGT GGCTCGCCCC CGCACCCGTA CCGCTGCCAC TGGTGGGGGC GCTGGCCGGC
GGCGATCCGG CCGACCCCGC TGCGGCCGCC GCCGATCCCG TCCTGCGCCG GCTGGGCGAG
GTCGGGCTCG CCGAGCGCAG CGCGGACGGC GTCGCGATCC ACCGGCTGGT GGCCGCCTTT
GCCCGCGCGT GCAATCCAGA CGATCGCGCT ACCCTCGCCG CAACGGCCGC AGCCGCAGTA
GCGGTGATGG ATATGCGTGA GATAGAGCGC GCACCACTGG CGGCAACCCC GTACCGCCCG
CACCTACTGG CGTTGTGCGA CCACGCTGGC GCGTTGGATG AACGGAGCGC AGCGCAACTG
CTGATGGTGA CGGCCGGGCT GCTGTACCAC CAAGGCGACT ACGCGGCCGC CCGCCCATTG
TACGAGCGGG CGCTGGCAAT CAGCGAACGG GCGCTGGGGC CCGACCACCC GCAGACGGCC
ACCAGCCTAA ACAATCTGGC CTTGCTGCTG GCATCCCAAG GCGACTACGC GGCCGCCCGC
CCATTGTACG AGCGGGCGCT GGCAATCCGC GAACGGGCGC TGGGGCCCGA CCACCCCGAT
ACGGCCGCCA GCCTGCACAA TCTGGCCTTG CTGCTGGCAT CCCAAGGCGA CTACGCGGCC
GCCCGCCCAT TGTACGAGCG GGCGCTGGCA ATCCGCGAAC GGGCGCTGGG GCCCGACCAC
CCCGATACGG CCACCAGCCT GGACAATCTG GCGTATCTGT TGCAGCAGCA AGGCGACTAC
GCGGCCGCCC GCCCATTGTA CGAGCGGGCG CTGGCAATCC GCGAACGGGC GCTGGGGCCC
GACCACCCGC AGACGGCCAC CAGCCTGCAC AATCTGGCCT TGCTGCTGGC ATCCCAAGGC
GACTACGCGG CCGCCCGCCC ATTGTACGAG CGGGCGCTGG CAATCAGCGA ACGGGCGCTG
GGGCCCGACC ACCCCGATAC GGCCACCAGC CTAAACAATC TGGCCTTGCT GCTGGAATCC
CAAGGCGACG ACGCGGCCGC CCGCCCATTG TACGAGCGGG CGCTGGCAAT CCGCGAACGG
GCGCTGGGGC CCGACCACCC CGATACGGCC ACCAGCCTGC ACAATCTGGC CAGGCTGCTG
TACCACCAAG GCGACTACGC GGCCGCCCGC CCATTGTACG AGCGGGCGCT GGCAATCTAT
GAACGGGCGC TGGGGCCCGA CCACCCGCAG ACGGCCACCA GCCTGAACAA TCTGGCCGGG
CTGCTGGCGT CCCAAGGCGA CTACGCGGCC GCCCGCCCGC TGGTCGAGCG GGCGCTGGCA
ATCCGCGAAC GGGCGCTGGG GCCCGACCAC CCGCAGACGG CCACCAGCCT GACCAATCTG
GCCGGGCTGC TGGCGTCCCA AGGCGACTAC GCGGCCGCCC GCCCATTGTA CGAGCGGGCG
CTGGCAATCT ATGAACGGGC GCTGGGGCCC GACCACCCGC AGACGGCCAC CAGCCTGCAC
AATCTGGCCA GGCTGCTGTA CCACCAAGGC GACTACGCGG CCGCCCGCCC ATTGTACGAG
CGGGCGCTGG CAATCCGCGA ACGGGCGCTG GGGCCCGACC ACCCCGATAC GGCCGCCAGC
CTGCACAATC TGGCCGGGCT GCTGTACCAC CAAGGCGACG ACGCGGCCGC CCGCCCATTG
TACGAGCGGG CGCTGGCAAT CTATGAACGG GCGCTGGGGC CCGACCACCC CGATACGGCC
ACCAGCCTGC ACAATCTGGC CGGGCTGCTG TACCACCAAG GCGACTATGC GGCCGCCCGC
CCATTGTACG AGCGGGCGCT GGCAATCTAT GAACGGGCGC TGGGGCCCGA CCACCCCGAT
ACGGCCACCA GCCTAAACAA TCTGGCCTTG CTGCTGGCAT CCCAAGGCGA CGACGCGGCC
GCCCGCCCAT TGTACGAGCG GGCGCTGGCA ATCCGCGAAC GGGCGCTGGG GCCCGACCAC
CCCGATACGG CCGCCAGCCT GACCAATCTG GCCTTGCTGC TGGCATCCCA AGGCGACGAC
GCGGCCGCCC GCCCATTGTT CGAGCGGGCG CTGGCAATCT ATGAACGGGC GCTAGGGCCC
GACCACCCCG ATACGGCCGC CAGCCTGAAC AATCTGGCCG GGCTGCTGGC ATCCCAAGGC
GACTACGCGG CCGCCCGCCC ATTGTTCGAG CGGGCGCTGC GGATTATGGA GCAAAGGTTG
GGAGTGAACC ACCCAAACAC GCAGCTTGTG CGTGCGAATC TGCGTAATCT TTTGAAACAG
TTGGGTGCGG CATAG
|
|---|
| Protein sequence | MHHPIAMLFI QHHRITDCAM NVTTLTLDLA PLADGRYHLR LTLHDGQSDT IRGPFVAGPF
DAVALRAVAL DPAAYGAALG RMLFAEAAAL AAYRELYAAA VNRADALRLR VLLPAELYGL
RWETLCDPEH NQPLALGKVW LSRYLAADDV TPLRPRPRSA LRAVIAIAAP HDAARWGLAP
IDAAAETARA RQALAEIAAD TDVVTATWEA LSAAVRAGCD ILYLVAHGAL VDHQPWLWLV
HGDGHAAKQA GADLAALIRS LAPDRRPRLI VLISCDGLTD DQPLTALGPR LAQAGVPAVL
TAHGALSQAA AAVALPVFFT ELSRDGQLDR ALTHARLALQ QARHSAWWAL TLLNRLSDGR
LWPPVTQPAT AAPFRVPYQP NPLFTGREQE IEQLVATLCA DSPEVTVITP VVHGTAGIGK
SQLAVMVAYH TRDRFPGGVF WLNMADADGI AAQVAACGGP DGLNLPGWAG LALADQVAAV
RRAWQEPVRR LLIFDNLEDP RLLAEWRPGV GGARVLVTSR NAHWRATLGV EHVALAPLSR
ADSRRLLLQP RAQAQRTAVD SLLADPATAA EADAICEQLG DLPLALALAG AYLEDLPNLP
LAAYRQQLAQ TVLSNESLSD ELAKVALLPT HYPRGVAAAI QLSYDRLDPQ RDAQARAVLH
RLAWLAPAPV PLPLVGALAG GDPADPAAAA ADPVLRRLGE VGLAERSADG VAIHRLVAAF
ARACNPDDRA TLAATAAAAV AVMDMREIER APLAATPYRP HLLALCDHAG ALDERSAAQL
LMVTAGLLYH QGDYAAARPL YERALAISER ALGPDHPQTA TSLNNLALLL ASQGDYAAAR
PLYERALAIR ERALGPDHPD TAASLHNLAL LLASQGDYAA ARPLYERALA IRERALGPDH
PDTATSLDNL AYLLQQQGDY AAARPLYERA LAIRERALGP DHPQTATSLH NLALLLASQG
DYAAARPLYE RALAISERAL GPDHPDTATS LNNLALLLES QGDDAAARPL YERALAIRER
ALGPDHPDTA TSLHNLARLL YHQGDYAAAR PLYERALAIY ERALGPDHPQ TATSLNNLAG
LLASQGDYAA ARPLVERALA IRERALGPDH PQTATSLTNL AGLLASQGDY AAARPLYERA
LAIYERALGP DHPQTATSLH NLARLLYHQG DYAAARPLYE RALAIRERAL GPDHPDTAAS
LHNLAGLLYH QGDDAAARPL YERALAIYER ALGPDHPDTA TSLHNLAGLL YHQGDYAAAR
PLYERALAIY ERALGPDHPD TATSLNNLAL LLASQGDDAA ARPLYERALA IRERALGPDH
PDTAASLTNL ALLLASQGDD AAARPLFERA LAIYERALGP DHPDTAASLN NLAGLLASQG
DYAAARPLFE RALRIMEQRL GVNHPNTQLV RANLRNLLKQ LGAA
|
|---|
| |