| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_4642 |
|---|
| Symbol | |
|---|
| ID | 7261671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 4950437 |
|---|
| End bp | 4951585 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643564558 |
|---|
| Product | Uroporphyrinogen-III decarboxylase-like protein |
|---|
| Protein accession | YP_002461078 |
|---|
| Protein GI | 219670643 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGTC GTGAAAGATT ATTAACTGCT TTAAGTCATA AGGAACCGGA TCGTATCCCT
CTGGATCTCG GGGCTGGATG TTCATGCAAA TTTACGAAGT ATTTTTATGT TAAACTTTTG
GATTATTTCG GTATTCAAGA GGAGCTGGTT ATGAATCATA TCCCCTACCA GCTGGTCACG
GCATCGGACA AAGTTCTGGA TCTTTTGAAA TGCGATGTGC GTTCCGCCTC ACTGCATCCT
ATCCCCCAGG CAGAGAATCC CTACGCCAAG AAATGGGAAG ACGCCGACAG CTACTACTAC
ACCAATAACT GGGGTACCCG CTACCGAATG CCCAAACATC AGGGCTTGTA TTATGATCTG
ATCGGAGGTG TGCTGCAGGA CTCCGAAGAT GAGGAAGGGG ATCAGAAGTT CATCTGGCCG
GTCCCGGAGA AATTTCCGGC CGCCGACCGC CAACAGCTGG AAGACTATCG CAGGGCAGGC
TTGGCCACCA CCATTTCCGA ACAGTTCGGC AACGGTTTCC TCCAGCAGGG GCCGCTGATG
TGGGGCTTTG AAAATTGGTT TGCCATGCTG CTTACCGAGC CGGAACGCTG CACACTGTTT
ATGGATAAGC TGCTGGAGAA AAAGAAGGAG TATTATGATC ATATCTTCGA GGTCTATGGC
GGACTGGTTG ACGTTTGCAG TGAGGCCGAT GATTTCGGCA CCCAGCGGGG GACCTTTGTG
TCGCCCAAAC TGATCAGAGA GATGATCCTT CCTTATCACA AGAAGCTCAA TGATTACCTC
AAGGCCAAGG GCGCCGGTTA TATGACCTTG CACAGCTGCG GCTCGGTGGA AGCATCCATT
CCGGATATTA TCGAAGCAGG CTTTGATTGT CTGAACCCGG TGCAGATATC CGCCGCCAAT
ATGAGCCCGG AGCACCTCAA GAAAACTTAC GGCAAGGACA TTACTTTCTG GGGCGGAGGC
ATCAACACCC AGTCAACTCT TCCTAACGGA ACACCGGAAC AAGTCAGGGA AGAAACCAAA
CGGAATATCG ACGCCTTTGC CCGGGACGGC GGCTTTGTGT TCGCAACCGT TCATAATGTA
CAGGATGATG TGCCCATTGA GAACTTTATC GCCATGTGGG AGACCTTCCA GGATCATTGT
AAGTATTGA
|
|---|
| Protein sequence | MNSRERLLTA LSHKEPDRIP LDLGAGCSCK FTKYFYVKLL DYFGIQEELV MNHIPYQLVT
ASDKVLDLLK CDVRSASLHP IPQAENPYAK KWEDADSYYY TNNWGTRYRM PKHQGLYYDL
IGGVLQDSED EEGDQKFIWP VPEKFPAADR QQLEDYRRAG LATTISEQFG NGFLQQGPLM
WGFENWFAML LTEPERCTLF MDKLLEKKKE YYDHIFEVYG GLVDVCSEAD DFGTQRGTFV
SPKLIREMIL PYHKKLNDYL KAKGAGYMTL HSCGSVEASI PDIIEAGFDC LNPVQISAAN
MSPEHLKKTY GKDITFWGGG INTQSTLPNG TPEQVREETK RNIDAFARDG GFVFATVHNV
QDDVPIENFI AMWETFQDHC KY
|
|---|
| |