Gene Dhaf_4632 details

Gene Information

• Locus tag: Dhaf_4632
• ID: 7261661
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: -
• Start bp: 4935824
• End bp: 4937698
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 643564549
• Product: TRAP dicarboxylate transporter, DctM subunit
• Protein accession: YP_002461069
• Protein GI: 219670634
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000248929
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCAAAG AAGAAGCACA ACAAAGAAAA ACCTTTTCGG GACTTTTAAG GGTACTTGAT 
CAAAGGTTTG AAGAAGTTGC AATAGTGGCC GGTTTTCTAT TCTTTACAAT TTTAATAACC 
TTACAGGTCA TCAACCGTTA TGTATTGACA TTTGCCGATA TTGCCAACAT TAATGTATGG 
TCGGAAGAGT TAGCTAGATA TGTTTTTATT TGGGTTTCAT ATATTGGGGC GGCTCTGGTT 
ATAAAAAAAC GAGCCAATAT CAATGTGGAC GCCGTTACCA GGATTTTACC TGTTTCTTTT 
AGTAAAGTCT TGAATTTGGT CAGTTCATTA TTAACCTTCG TTTTGTTTTA CATTCTGATT 
AAAGGCGGAA TAGCCACTAT AACTATGCAG GTTACCAATC ATCAGGTTAC TCCGGCAATG 
GGAATCCCTA TGTACATACC ATATTTAGCC GTTCCTTTGG GAATCAGTCT GATGTTCTTC 
AGAACACTGC AAAACATTAT TGCAGACATC AAAGAAATGA GCTTTCAATC GATTGTGCTG 
GGCATAGCAA TTACCATTAT ACTGTTTTTA CCCATTTTGC TGGTTGATAA TATTAACGCT 
ACTCTTTTGT TATTTGCTTA TTTTATATTA TTGATAATAA TGGGCGTACC CATTGCCTTT 
AGTTTGGGAA TTGCTACTTT GGTTACAACA ATAAACTCTC AAGCTATACC TTTGGATTAT 
TTTTCTCAGG CAGCGTTTAA CGGCATTGAT AGCTTTCCCA TTATGGCCAT ACCATTTTTT 
GTAGCTGCGG GAGTCATCAT GGGAAGCGGA GGCTTATTAA GAAGGCTGTT AAATCTGGGC 
AATGAATTAG TAGGCTTCTT CCCGGGCGGA TTAGCTTTAG TGACGGTTAT TACCTGCATG 
TTCTTTGCCG CAATAAGCGG TTCCGGGCCG GCGACGGTTG CTGCAGTGGG AACTATGATG 
ATACCTGAAA TGAAAAGGCA GGGATATAGC GTTGCTTTCA GTGCGGCAAT AGTAGCAGCT 
GCCGGCTCAA TTGGTGTCAT TATTCCACCT AGTAATCCTT TTGTTATTTA TGGAGTTGTT 
GGCCAAGAAT CGGTTGGAAA ACTGTTTATT GCAGGTATTA TTCCTGGAGT CCTAATTGGT 
ATAATTTTAA TGATTCTGGC TTATAGTACC TCAAAGAAAA ATGGTTGGAA AGGCAATAAA 
GATCGAATAG ATATAATTGC AGTACTTCGA GCCGCATGGG ATGCCAAATT GGCTTTAGTC 
GTACCTGTTA TTATTTTGGG CGGTATTTAT GGCGGATATA TGACTCCTAC GGAAGCAGCA 
GCCATTTCTG TAACTTACGG TTTGCTCATT GGACTGTTTG TTTACCGTGA TTTAAAATTC 
AAGGATATGT ACAATTGTCT GGTCGAGTCA GGTTCCACCA CCGCGGTGAT CATTATTCTT 
ATGGCTATGG CGACAATCTT TGGCAGATTC ATTACTATAG AGCGAGTCGC TGAGACAGTG 
GCAGCTTTTG TATTGGGTAT CAGTACGAAT AAAGTTATTG TATTGTTGTT GATCAATATA 
TTTCTTCTTT TTGTAGGAAT GGTTATGGAG GCACTTGCGG CAATCATCAT TTTAACCCCT 
ATTTTACTGC CAATGGTCTC ACAGCTGGGT GTGGATCCTA TACAATTTGG CGTTATCATG 
GTCGTCAATT TAGCGATTGG TTTCATAACA CCACCAGTCG GAGTTAATTT GTTCGTTGCT 
TCCGGAATAT CAAAAGTAAG AATAGAAGAA ATCACCCGCC CAGCTATCCC GCTTATCCTG 
GGTATGATAT TTATCCTTTT ACTGGTTACC TATATACCAG AGATTTCCTT ATGGCTTCCT 
TCATTAATGC GTTAA 

 

Protein sequence

MIKEEAQQRK TFSGLLRVLD QRFEEVAIVA GFLFFTILIT LQVINRYVLT FADIANINVW 
SEELARYVFI WVSYIGAALV IKKRANINVD AVTRILPVSF SKVLNLVSSL LTFVLFYILI 
KGGIATITMQ VTNHQVTPAM GIPMYIPYLA VPLGISLMFF RTLQNIIADI KEMSFQSIVL 
GIAITIILFL PILLVDNINA TLLLFAYFIL LIIMGVPIAF SLGIATLVTT INSQAIPLDY 
FSQAAFNGID SFPIMAIPFF VAAGVIMGSG GLLRRLLNLG NELVGFFPGG LALVTVITCM 
FFAAISGSGP ATVAAVGTMM IPEMKRQGYS VAFSAAIVAA AGSIGVIIPP SNPFVIYGVV 
GQESVGKLFI AGIIPGVLIG IILMILAYST SKKNGWKGNK DRIDIIAVLR AAWDAKLALV 
VPVIILGGIY GGYMTPTEAA AISVTYGLLI GLFVYRDLKF KDMYNCLVES GSTTAVIIIL 
MAMATIFGRF ITIERVAETV AAFVLGISTN KVIVLLLINI FLLFVGMVME ALAAIIILTP 
ILLPMVSQLG VDPIQFGVIM VVNLAIGFIT PPVGVNLFVA SGISKVRIEE ITRPAIPLIL 
GMIFILLLVT YIPEISLWLP SLMR