Gene Dhaf_4608 details

Gene Information

• Locus tag: Dhaf_4608
• ID: 7261637
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: -
• Start bp: 4908521
• End bp: 4910521
• Gene Length: 2001 bp
• Protein Length: 666 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 643564525
• Product: sigma54 specific transcriptional regulator, Fis family
• Protein accession: YP_002461045
• Protein GI: 219670610
• COG category: [K] Transcription; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG3284] Transcriptional activator of acetoin/glycerol metabolism

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000341732
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGGAGA AAACCCAGGA AGATGTGCTT TTAGCGTGGC AAACCTTTAT ATCTCGCGGA 
ATTATACTGG AAGATAAAGT CCGGCCGATT ATTGCAAGGT CTTGGCAGCG TTGTTTAAGC 
TACGGGTTGG ATCCATGGTC TTCGGACTAT CCTAAATGCT CAGATACACT CTTAAAAGAA 
AAACGGCGTG AATATAACTC CTTGCTCGTT CGGATCAGGC CGGTCATGGA GCTTCTGTTT 
GCAATGCTTC ATTGCAACAT ATCCATTTGC GATGGGAAAG GTTTTGTTTT TGATTTAATC 
ACCCCTCTGA AATCTTACCC CAGAACTCTG GGCACCTATA TTGAAGAAGC CACCTGTGGC 
AACGGTGCCC TGACCATTGC CCTGCAGGAG AAAGTTCCTG TGCGGATTGA CGGGTATGAG 
AAATATCGGG TGATTTCCCA TCCGTACTCA AGCGTGTGTG CGCCCATTGT GGTGAATAAG 
GAACTCATTG GCGCGATCAA TGCCACCAGC CCTTTCGGGG CGCTTCCCCA AGAAGCCCTT 
GAAGTGATCA TTGCTGCGGG AAAACTGATT GAGAGCTTAT TGCTTGAAAG GGACGGACAA 
AACCTCGCGG AAAACTTCCA GCCCTGGCGG GAGTTAATAG ACTGCTCCTC CTGGGCCCTG 
ATCTTTCTTG ATGAGGAGAA CAGGATAGCC GCGGCCAATA AAGTCGCCTG CCAGGAATTG 
GGATGCGGAC AGGAAGAGCA ATGGCTGAAC CGGCCCATAG AAGAGGTGCT TATTGATAAA 
AGAGACTCGG CTTATTTAAC AAGGGACGAT TCCGGACAAC CAAAGCCTCC CCAGAAGATA 
AGATTTAAGC TTCATGACAG TCAGGGCGGG GCAATCCGGT CCATGGAACT GATCCGTAAA 
AATAGCCTTG AGCTTGCACT AGGGCGGTAC CGGCGGGTGC TGCTGCTGGA CCCGGGCCTG 
CCTGCTCACG GAGGGCCGGT TAACCCGGAG CAGCCGGTCT CCAGCTATTT ACTCAACAAT 
CACTCTCAAG AGGTTGAGTT TCTGGGAAAG GGTGAGGAAT GGAAGAAAAT CAAGGAATTG 
GTGAGCAGGA CCAGTCCTTT TCCCTCCAGT GTTTTGCTGC TTGGTGAGAC GGGAACGGGA 
AAGGAAGTTC TCGCCCGGAC GATTCATAGG TTAAGTCAGC GGCAGGGCAA CTTTGTCGCC 
GTCAATTGCG GCGCCATTCC CAGAGAACTG CTGCAAAGCG AGTTGTTTGG CTATGTAGGG 
GGAGCGTTTA CCGGGGCCAG ATCCGGCGGT TCCGTAGGAA AATTCGAACA TGCTCACAAA 
GGAACCCTCT TTTTGGATGA GATCGGTGAA ATGCCTATGG ATATGCAGGT CAGCCTTTTG 
CGATTTTTGC AGGAACGCAC CGTGACCAAA ATAAACTCCA ATTATCCCAA ACCTGTGGAT 
GTGAGGATTA TCGCCGCCAC CAATAAGAAT ATGTACGACC TGGTGGGACA GGGACTTTTT 
CGCGAAGATC TATATTACCG GCTCAATGTG ATTGAAATAA ATATCCCTCC CCTTCGGGAG 
AGAAAAGAGG ATATCCCCAT GCTTGCCCAG TTCTTTGTGG CCGAATTATG CAAGCAGTTC 
AATATCCTGC CCAAAAAGAT CGACGAAGCA ACTATGGAGA CCCTTGACCG CCATGTTTGG 
CCAGGCAATG TCAGGGAGTT AAAAAATGTC ATGGAGAAGG CTGTCGTGAT GACCGCGGGT 
GACACCATCA CACCGGATGT TCTGCCTAAG CAGATTTTTC AAACTCTTGA ACCCCCTTCT 
CCCCAGCCTG CTGATAACCC CGGAACTGAA GCAGAGGAGC TCAGTGAAAA GGACTATATC 
CTGCACATGC TGGAACAGCA TGGGGGCAAT GTCGCTCAAA CAGCCAAAGC CTTGAATATT 
GCCCGCAATA CCTTATACAG AAGATTGCTG AAGCATAATA TTCAACTCAA GGTGCAGCCT 
GTTCAAGGAA ATAAAAAATA A 

 

Protein sequence

MSEKTQEDVL LAWQTFISRG IILEDKVRPI IARSWQRCLS YGLDPWSSDY PKCSDTLLKE 
KRREYNSLLV RIRPVMELLF AMLHCNISIC DGKGFVFDLI TPLKSYPRTL GTYIEEATCG 
NGALTIALQE KVPVRIDGYE KYRVISHPYS SVCAPIVVNK ELIGAINATS PFGALPQEAL 
EVIIAAGKLI ESLLLERDGQ NLAENFQPWR ELIDCSSWAL IFLDEENRIA AANKVACQEL 
GCGQEEQWLN RPIEEVLIDK RDSAYLTRDD SGQPKPPQKI RFKLHDSQGG AIRSMELIRK 
NSLELALGRY RRVLLLDPGL PAHGGPVNPE QPVSSYLLNN HSQEVEFLGK GEEWKKIKEL 
VSRTSPFPSS VLLLGETGTG KEVLARTIHR LSQRQGNFVA VNCGAIPREL LQSELFGYVG 
GAFTGARSGG SVGKFEHAHK GTLFLDEIGE MPMDMQVSLL RFLQERTVTK INSNYPKPVD 
VRIIAATNKN MYDLVGQGLF REDLYYRLNV IEINIPPLRE RKEDIPMLAQ FFVAELCKQF 
NILPKKIDEA TMETLDRHVW PGNVRELKNV MEKAVVMTAG DTITPDVLPK QIFQTLEPPS 
PQPADNPGTE AEELSEKDYI LHMLEQHGGN VAQTAKALNI ARNTLYRRLL KHNIQLKVQP 
VQGNKK