Gene Dhaf_3980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3980 
Symbol 
ID7261000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp4232092 
End bp4234071 
Gene Length1980 bp 
Protein Length659 aa 
Translation table11 
GC content54% 
IMG OID643563901 
Producthistidine kinase 
Protein accessionYP_002460429 
Protein GI219669994 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR03669] urea ABC transporter, substrate-binding protein, archaeal type 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGAACC GAAGGCGGGA GAATCAGGGT GTTTCAACAG ATCCCGACAA AACGGCTCTT 
ATGCAGGCTT ATGAAGACCT GAATTCCTTC ATCTATACCA TATCCCACGA ATTGAAAACC
CCGGCGCGGG AGATCAGCCT TTATGCGGAA TTCATCGAGG AAGACAATAA GGCGAATCTT
CTGCCCCAGT CTGTGGAGGA CATCCGTTCC ATCCGCAGGA CCTGCGACAG CATGACGATG
ATGGTCCAGC GGCTTATGGA ATATTCCAAG GCGGGTTTTA AGATCATTGA ACAACAGCAA
ATCAGCGCAG CGCTTCTTGT GCGCCAGTGC TTCGATGAGA TCATGCGTTC CGTCCCCGGG
CGCAAAGTCG AGCTGACGGT GGGGGATCTT CCCGAAATTA TGGGAGACCT GTTTCTGATT
AAGCTTATGA TGACCAACAT ACTTTCCAAC AGCATCAAGT TCACCCGCGA AAAGGCGAAC
GCCAGAATCA ATGTCACTGC CAAGATCCTG GAAGACACGC TGGAATTTCA TTTCCGGGAT
AACGGCATAG GATTTGATAT GGCCTATGCG GGACGGATCT TCGAGGCCTT CCAGCGCCTG
CAGGATGAGG ACGCCTACGA AGGGAGCGGC ATCGGCTTGG CAACGGTCAA GAAAATCGCC
CAGCGCTTCG GCGGCGATGC CTCGATCATC GGCTGGCCCG GAAAGGGGTG TGAAGTCTGC
GTCAGCTTTC CCGGAAGTCT CTTAAAAACA CCCAGGGATA ACAGGGAATC CGAGCGGGAC
GTTATTAAGG TCGGCATCAT CGGAGATTTT ACCGGCATAT GCTCGGAACT GGAACGGGGC
AAAGTTGCGG CTTACAAGCT TGCCGCCGAT GAAATAAACC GGATGGGCGG AATAAACGAA
AAAAAGGTGG AGCTGCTGTT CCGCGACGAC CGGTCCCTTT CCGAGCTGAC CCGGGAAGCC
GTCAAGGAGC TGACGGAAGA GGAGCGGGTG GACGTCCTGA TGGGCTCGAC CCTATCCCCT
TCCCGGGAGA TCATGCAGCA TTACGCCGAT CAGACGAAAA CCCTATATCT CGATACCCAG
CAAACGGAAG GAGGAGTCTC CAGTCATTAT ACTTTCTGCC TTTCGGCGAT GCCTGAACAA
CAGATGACCC AGATGCTGGC CTATCTCCTG CAAAAATACG GGCGGAAATG CTACGTGGTG
GCTGCCGACT ACAATTATGG CATCCTCTCC GCGGAATGGG TAAAGTACCT TGTGCACCAA
CTGGGCGGGG AGATCGTGGG CGTCGAATAC CTCGACGACC GGATTACGGA TTTCAACCCG
CTCATAGACC GGATCCTTCA GCTCGAGGCG GATATATTGT TTTCCATCTG CGTCTTTCCC
AACCACGACG CCTTTTATCT CCAATGGCAT CAGCGCGGTC TCAACCATAT CCCCAACGCC
TCAACCATGG TCGCCGCCGA AGCTTACCAG AACGTCAGGT TTGCGCCCCC TGTGCTGGAA
AATATGTACG TCATGGCTTC CTTTATCGAG GAGCTGAATA CGCCGGCGGC TCAAAGGTTT
GTCAAAAAGT TCAGAGCGGC TTACGATCAC CGGGAAGTTC CCTATATGAG CATGGACACA
GAGACCGTCT ATACGGCGAT GTATGTCTAT AAACGCGCCG TTGAGCTGGC GGGAACGACC
GATACGGAAG AGGTCATTAC CGCCCTGGAA TCGGGAGCCG TTTATGTTGA CGGCCCTGGC
GGCCGGGTGA CCGTGCGCGG AGAGGATCAT CATACCAGCA GAAGCCTGTC CTGTTTCCGG
ATCAACAACC AGCACCGGGC AGAGGAGCTG TTTTGTACCA ACCCCATCCA TTCGGATTAC
ATAGAATCCA TGATCGAGCA GACCATGGGC GTAAAGGGCG GCATCAAGGC CATGGGCGCC
AACGCACCCA GCACCCAGTA CAATATGCTC CTGAACAAAT TCCGCTGGCA TCCCTCCTGA
 
Protein sequence
MENRRRENQG VSTDPDKTAL MQAYEDLNSF IYTISHELKT PAREISLYAE FIEEDNKANL 
LPQSVEDIRS IRRTCDSMTM MVQRLMEYSK AGFKIIEQQQ ISAALLVRQC FDEIMRSVPG
RKVELTVGDL PEIMGDLFLI KLMMTNILSN SIKFTREKAN ARINVTAKIL EDTLEFHFRD
NGIGFDMAYA GRIFEAFQRL QDEDAYEGSG IGLATVKKIA QRFGGDASII GWPGKGCEVC
VSFPGSLLKT PRDNRESERD VIKVGIIGDF TGICSELERG KVAAYKLAAD EINRMGGINE
KKVELLFRDD RSLSELTREA VKELTEEERV DVLMGSTLSP SREIMQHYAD QTKTLYLDTQ
QTEGGVSSHY TFCLSAMPEQ QMTQMLAYLL QKYGRKCYVV AADYNYGILS AEWVKYLVHQ
LGGEIVGVEY LDDRITDFNP LIDRILQLEA DILFSICVFP NHDAFYLQWH QRGLNHIPNA
STMVAAEAYQ NVRFAPPVLE NMYVMASFIE ELNTPAAQRF VKKFRAAYDH REVPYMSMDT
ETVYTAMYVY KRAVELAGTT DTEEVITALE SGAVYVDGPG GRVTVRGEDH HTSRSLSCFR
INNQHRAEEL FCTNPIHSDY IESMIEQTMG VKGGIKAMGA NAPSTQYNML LNKFRWHPS