Gene Dhaf_3977 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3977 
Symbol 
ID7260997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand- 
Start bp4228315 
End bp4229268 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content51% 
IMG OID643563898 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_002460426 
Protein GI219669991 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00064636 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAAAG GAACAAGTAG TGGCATAAGT GTTTGGCAAG AGCTGTTGCG TTTGGTGGTC 
GTCATCTTTG GTGTGATCAC GTTGAGTTTT TGCCTCCAGC TTTTCACTGG GACAGATCCG 
GCGGAAATGA TCGTGCGCAA GCAGAATGTT TTTGCCACGG AGGAACAGAT CCAGGCAGTC 
CGGGAGGAGC TGAAGCTGGA CGCCCCCTTT CATGTAAGGT ATCTGGATTA TCTGGGGGGT 
GTAGTACAGG GGGATCTGGG GACCGCCATC ATGAACAGGC GGCCGGTAGC GGAAAATATC 
AGAGAGGTGC TGCCGGTTAC CACCATACTT ATTGTGCTGG CCATGCTCTG GGTGGTCCTG 
TTCAGCATCA TGATCGCGGC GGCTTCCGTT CTCAGGAAAG ACAAAGCCTT TGACAATGTG 
ACGCGGATCG TTTGCATCAT TGGGATTTGT GTACCTAGTT TCTGGCTGGG CCTGATTTTG 
CTCACGGTCT TTGCCGTCAG GATGCCGGTT TTTCAGGTGA TTGCAGATGG GAGCTTAAAA 
TCTTTCATTT TACCGTCCGT GGCCATGGCC TTTCCGATCA CCTGCATTTC CATCCGGGTC 
TTGCGGGCTT CGGTACTCAA TGAGTTGAAC AGCGATTATG TTACTTATGC CAGGGCCCGG 
GGCTTTACCA ATGGACAAAT TATCTATGGC GAGGTTCTGA AAAATGCCCT GCCCCCGGCC 
ATTACTCTGT TCGCTCAATA TTGTGCCGCA CTTTTCGGCA CATCGGCCCT GGTGGAAAGT 
GTTTTTTCCA TCCGGGGGCT GGGCATCTAT CTGATGGAGT CCTGCGAAAG CATGGATGTC 
TACGGAATTT CAGGTTCTAT TTTGGTATGT GCGGTGCTCT TTGTGTTGTT TAACATGGCG 
GCGGATCTTT TGTCCAGCGC GGTTTGCCCT GCTTACGGGA GGAAAAGGAT ATGA
 
Protein sequence
MLKGTSSGIS VWQELLRLVV VIFGVITLSF CLQLFTGTDP AEMIVRKQNV FATEEQIQAV 
REELKLDAPF HVRYLDYLGG VVQGDLGTAI MNRRPVAENI REVLPVTTIL IVLAMLWVVL 
FSIMIAAASV LRKDKAFDNV TRIVCIIGIC VPSFWLGLIL LTVFAVRMPV FQVIADGSLK 
SFILPSVAMA FPITCISIRV LRASVLNELN SDYVTYARAR GFTNGQIIYG EVLKNALPPA 
ITLFAQYCAA LFGTSALVES VFSIRGLGIY LMESCESMDV YGISGSILVC AVLFVLFNMA 
ADLLSSAVCP AYGRKRI