Gene Dhaf_3842 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3842 
Symbol 
ID7260863 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp4081224 
End bp4081898 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content51% 
IMG OID643563766 
ProductRibulose-phosphate 3-epimerase 
Protein accessionYP_002460294 
Protein GI219669859 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0107323 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAAAA TTGCGCCCTC CATTTTATCG GCAGACTTTG CCCATTTGGG AGATCAGGTT 
GCCTTAGTGG AAAAAGCAGG GGCTGAAGTC TTACATATTG ATGTGATGGA TGGGCATTTT
GTACCCAACA TTACCATTGG CCCCCTGGTG GTTAAAGCGC TGCGGCCTTA TTCCCAGATG
CGCTTTGATG TCCATTTAAT GATTGAACAT CCGGAACGCT TTATTGAGGA ATTCGCGAAA
GCCGGGGCGG ATCATATTAC AGTGCATCTG GAAGCCACGC CCCATATCCA TCGTGCCATC
CAGCAGATTA AGGGGTTAGG TCTTACCGCA GGAGTTTCCA TTAATCCGGC CACCCCTTTG
GACGGAATCA AGTACATCCT CGATGAATTG GATATGGTTT TGATTATGAG CGTTAATCCG
GGCTTTGGGG GGCAGAAATT TATCCCCGCG GTTCTTCCTA AGATTGAAGT TCTTCACCGG
CATCTCGATC AGATGCAATC CTCTTGTGAG ATTGAGGTGG ACGGAGGAAT CAATCTGGAC
ACGGCTCCTG CCGTAGTCAA AGCCGGTGCC AATATCCTGG TGGCCGGAGC GGCGGTATTT
GCCTGCGCTG ACCCGGCCCG GGCAGTCCAA GAGCTCCGGG AAGCGGCCCA AGGCTATAAG
GGTGATCCAA AGTGA
 
Protein sequence
MIKIAPSILS ADFAHLGDQV ALVEKAGAEV LHIDVMDGHF VPNITIGPLV VKALRPYSQM 
RFDVHLMIEH PERFIEEFAK AGADHITVHL EATPHIHRAI QQIKGLGLTA GVSINPATPL
DGIKYILDEL DMVLIMSVNP GFGGQKFIPA VLPKIEVLHR HLDQMQSSCE IEVDGGINLD
TAPAVVKAGA NILVAGAAVF ACADPARAVQ ELREAAQGYK GDPK