Gene Dhaf_3717 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3717 
Symbol 
ID7260738 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp3949908 
End bp3951998 
Gene Length2091 bp 
Protein Length696 aa 
Translation table11 
GC content51% 
IMG OID643563641 
ProductDNA topoisomerase I 
Protein accessionYP_002460169 
Protein GI219669734 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID[TIGR01051] DNA topoisomerase I, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000589001 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAAAA CACTCGTGAT CGTTGAATCT CCGGCTAAGG CTAAATCCAT AAGCAAATTT 
TTAAGCAATA ATTATACGGT CAAAGCGTCC ATGGGACATT TGCGGGATTT GCCCAAAAGC
CAAATGGGAG TTGACGTAGA CAATGACTTC GAACCCAAAT ATATAGCGAT TCGTGGACGC
GGGGATTTAA TTAAAGAGCT GCGGGCCGCC GCGAAGACCG CTAATAAAAT TCTCCTGGCC
TCTGACCCCG ACCGCGAGGG GGAAGCTATT GCCTGGCATT TAGGCCATCT GCTCGGTTTG
GATCTAGCGG AGAAGTGCCG CATTGAATTC CATGAGATTA CCAAACCGGC TATTACGGCT
GCCATTAAAC ACCCCCGTCA GATCGATTCC AGTAAAGTAG ATGCCCAACA AGCCCGTCGC
GTCTTAGATC GTTTGGTGGG GTACCAGCTG AGTCCGTTCC TTTGGAGAAA AGTGAAAAAG
GGCTTAAGTG CCGGCCGGGT TCAATCGGTT GCTGTTCGTT TAATTTGCGA TCGGGAAGAA
GAGATTCGGG AGTTCATCCC GGAAGAATAC TGGACGTTGA CCGCTTCCTT GAAAAGTGAG
GGAGGGGTAT TTTCGGCTAA GCTCGCCAGG AAAGGGGAGC ACAGGATTGC CATTGCTTCG
GAAGAAGAGA TGCAGAAGGT TCTCCAAGAG CTGGCAGATC AGACCTACCG GGTTAAAGAT
GTTCGCACCA AGGAGAAAAA GAAACAACCT TCACCCCCCT TTACCACCAG CAGCCTGCAA
CAGGAAGCTC ATCGCAAGCT GAATATGTCA CCGAAAAGGA CCATGATGCT GGCCCAGCAG
CTCTATGAAG GGATCGAGCT GGGTAAGGCG GGAGGCATTG GTTTAATTAC CTATATGCGT
ACCGACTCCG TGAGAATTTC AGAGACTGCC CAAGAAGAAG CCAAGGAGTT TATTGCCGAG
CACTATGGGG CGGATTATTA TCCTCCGGAA CCCCGTCAAT TTAAAAGCAA AGGCCGGGCC
CAAGAAGCCC ATGAGGCCAT TCGCCCTACT TCCATATTGA GAACACCGGA CTCCGTGAAG
GAGTTCTTGT CCAGGGATCA ACTGCGTCTT TACCGGTTAG TCTGGGAGCG TTTCCTGGCC
AGCCAAATGA GTGCGGCTGT CCTTGATACC TTAACTGTTG AAGTGGAGGC CGGGGAGTAC
TTATTCCGTG CTAACGCTTC CACCGTGCGT TTCCCCGGGT ATCTTGCCGT TTATGAAGAT
GGACAGGATG AGAATGACGA CCAGGAAGAA GGGACCCTCG CGGCCAATAT TCAACCTGAT
GAGAGTCTCA ATGTCCTTCA GCTCCAGGAG AAGCAGCATT TTACAGAACC ACCTCCCAAG
TATACGGAAG CCTCTTTGGT ACGCAAAATG GAGGAGGAGG GAATCGGCCG GCCCAGTACC
TATGCTCCGA CTATCGAAAC CATTCAATCC CGGGGCTATG TGGCGAAGGA AGGGAAACAG
CTTTCTCCCA CTGAATTGGG AGAAATCGTC GTCTCTATTC TCAAAGAGTA TTTCCCGGAG
ATCGTGGATT TGGAATTCAC GGCCAATATG GAGAAAAGGC TGGATGATAT TGAAGAAGGA
GCTTTACCCT GGAAAGCCGT CATTCGGGAT TTCTATGGCC CCTTTGCGGA ATCCATAGAG
GAAGCGGATC AGGTGATGGG TAAGGTACAA ATCGAAGATA AGGTATCGGA AGAAATCTGT
GAAAACTGCG GTCGCAATAT GGTGATCAAA ATGGGACGCT ATGGTAAGTT TCTGGCCTGT
CCGGGCTTCC CTGAATGCCG TAACACCAAA CCTCTGCTGG AAGAGGTGGG AAGGCCCTGT
CCTGACTGCG GGAACCCGCT GGTGATTCGG CGCAGCAAGA AGGGCAGAAA GTTCTATGGC
TGCAGCACTT ACCCGGAATG TGAGTTTGTA TCATGGGAGT TGCCGGCGCC GGAGCCCTGT
CCGAAATGCG GAGGGTTGAT GGTGGTTAAG ACTTCGAAGC AAGGGCAAAA ATATGTCTGC
ACCAATTCCG AATGCCGTTT TGACAAGCAA GTAGAGGAGC AAGCAGAATA A
 
Protein sequence
MAKTLVIVES PAKAKSISKF LSNNYTVKAS MGHLRDLPKS QMGVDVDNDF EPKYIAIRGR 
GDLIKELRAA AKTANKILLA SDPDREGEAI AWHLGHLLGL DLAEKCRIEF HEITKPAITA
AIKHPRQIDS SKVDAQQARR VLDRLVGYQL SPFLWRKVKK GLSAGRVQSV AVRLICDREE
EIREFIPEEY WTLTASLKSE GGVFSAKLAR KGEHRIAIAS EEEMQKVLQE LADQTYRVKD
VRTKEKKKQP SPPFTTSSLQ QEAHRKLNMS PKRTMMLAQQ LYEGIELGKA GGIGLITYMR
TDSVRISETA QEEAKEFIAE HYGADYYPPE PRQFKSKGRA QEAHEAIRPT SILRTPDSVK
EFLSRDQLRL YRLVWERFLA SQMSAAVLDT LTVEVEAGEY LFRANASTVR FPGYLAVYED
GQDENDDQEE GTLAANIQPD ESLNVLQLQE KQHFTEPPPK YTEASLVRKM EEEGIGRPST
YAPTIETIQS RGYVAKEGKQ LSPTELGEIV VSILKEYFPE IVDLEFTANM EKRLDDIEEG
ALPWKAVIRD FYGPFAESIE EADQVMGKVQ IEDKVSEEIC ENCGRNMVIK MGRYGKFLAC
PGFPECRNTK PLLEEVGRPC PDCGNPLVIR RSKKGRKFYG CSTYPECEFV SWELPAPEPC
PKCGGLMVVK TSKQGQKYVC TNSECRFDKQ VEEQAE