Gene Dhaf_3656 details

Gene Information

• Locus tag: Dhaf_3656
• ID: 7260677
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: -
• Start bp: 3889568
• End bp: 3891496
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 643563581
• Product: putative sigma54 specific transcriptional regulator
• Protein accession: YP_002460109
• Protein GI: 219669674
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000374814
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCGGAA AAATCGTCTT GACATCCCCA GATAAGAAAA CGACTAGATT ATTGGAAAAG 
ATTAGAAAGG AATATAACTT CGAAATTGAT GCTTATGAAG CAACCTTTGA TGATGCGGTA 
GAGCTCATTC GGGGTAAAGT GGCTCATCGG GAGCATTGGG ATCCGATCAT TGCCACCGGT 
GGCGCAACCC TTGGGTTGCT CCGGGACAAT TTGGGAAGAA TGCCTTGGGT AAATATTTTT 
CCAACCGAGT ATGACTTGGT TATAGCTCTT GAACAGGCAA AGAAAACGAA AAAAACCATA 
GGGCTGTTTA ATCCCGGACA AATTGATACC GAAGCGATCA AAGCCGTTTG TTCAGCGATA 
CAGATTGACG CGCACATCTA TCGATATAAC AGTTGGAAGG AAGTGCTGGT TCAGGTTGAA 
AAGGCCTATC AGGATGGAGT AGAAGTAGCC ATTGGGGCCG GAGAAAAGAT TTCATCAGCT 
GTAGAGAGGA AAAATATTCA ATATGTATCG GTAACGAGCG GTGAATATAC GATTAGAAGA 
GCCTTTAAAT ATGCTCAGTT ACTTGTGGAT CTTAAGCGTA ATGAGAAGGT CTCCCACGAA 
TGCATCAAGA CAATAGCCGA TTCTACCCAC GAAGGGATGA TTCATTTAAA TGAGAATCGG 
ATATTGGTCA ATTTTAATGC CAATGCGGCG AAGTTTTTTG GACTCCATGA GAAAGATGTA 
ATAGGAAAAT CTGTCCAGGA TCTGAGCGGC TGTCCAAGCC TGGCAGCTCT GTTAAAGGAT 
TTTGATCAGA AGCTGAATTT CCTGCACCAT ACTCCGAAGG GAACGATTTT GGTTAATAAA 
GTTCCGATTC TTCACAATCA CCAATTCAGG GGCATTATGA TTAACTTTAA AGAGGCTAAT 
CAGGAAGAAT GGGAAAAAAC GAGAGCAACC GGGACCAAGG GATTGGTGGC CAAACATCAT 
TTTAGAGACA TCATCAACAA CAACAGTAAA ATGTCTGAAG TAATAACTAT GGCCATGAGA 
TATGCTAATA CAGACTGCAA TGTACTGATC AAAGGAGAAA CCGGAACCGG CAAGGAGCTT 
ATCTCTCAAA GCATTCATAA TGGACACCGC CAACGCTCCC GTAAGCCTTT TGTGGCGGTC 
AATTGTGCTT CATTGGACGG CAGTCTATTG AATAGTGAGC TTTTCGGCTA CAGTGAAGGG 
GCCTTCACGG GCGCAAGTAA GGGCGGAAAA CCGGGGCTAT TCGAAATAGC TCATGGTGGA 
ACCCTGTTTT TGGATGAAAT AGATAAAATG AAAAAGGATG TTCAAGCAAA TCTTCTAAGG 
GTTCTCCAGG AGAAGGAAAT TCGCAGAATC GGCAGCGATC AGGTTGTTTC TGTGGATGTA 
CGCATCATAG CCGCTTCCAA TGAGGATCTC TTGGATCTGG TCAGAAAAGG AGAATTTAGA 
GAAGATCTGT ATTATCGTTT AAACGTCTTG AAACTAACCC TGCCCCCTCT TCGAGAAAGA 
AGAGGGGATA TACCTCACCT CGTCAGAGTC TATCTGCAAA AGTACACCGA AAAATATAAT 
AAAATAAATA TTGAGCTGCC TGCGGCTGTT CTTGACAAGA TATCCCATTG CGAATGGTAT 
GGAAATATAC GACAGTTGAA TCATTTTATA GAAAGGTGCG TTGTCCTGTG TGACGACGGA 
AATGATTTGC CCGAGATTAT CTTAATGATG CTGGAAGAAG AATTCTCGAC CCGGCCCACA 
CTGCACGCCA GAGAGGAGGA AGAACAAGAC AATGACACCA TTAATGTGCG GATAAGGTCC 
TTAGAGGAAA TGAATGCAGA AATTGTTCAT AGAGTAAAGG CGAAGACAAA AATCTCCAAC 
GGTGAACTCG CATTAATGAT GGGGATTAGC CGGCCCACAC TGCTTAAAAT GCTGAAAAGT 
GGCAGGTGA 

 

Protein sequence

MFGKIVLTSP DKKTTRLLEK IRKEYNFEID AYEATFDDAV ELIRGKVAHR EHWDPIIATG 
GATLGLLRDN LGRMPWVNIF PTEYDLVIAL EQAKKTKKTI GLFNPGQIDT EAIKAVCSAI 
QIDAHIYRYN SWKEVLVQVE KAYQDGVEVA IGAGEKISSA VERKNIQYVS VTSGEYTIRR 
AFKYAQLLVD LKRNEKVSHE CIKTIADSTH EGMIHLNENR ILVNFNANAA KFFGLHEKDV 
IGKSVQDLSG CPSLAALLKD FDQKLNFLHH TPKGTILVNK VPILHNHQFR GIMINFKEAN 
QEEWEKTRAT GTKGLVAKHH FRDIINNNSK MSEVITMAMR YANTDCNVLI KGETGTGKEL 
ISQSIHNGHR QRSRKPFVAV NCASLDGSLL NSELFGYSEG AFTGASKGGK PGLFEIAHGG 
TLFLDEIDKM KKDVQANLLR VLQEKEIRRI GSDQVVSVDV RIIAASNEDL LDLVRKGEFR 
EDLYYRLNVL KLTLPPLRER RGDIPHLVRV YLQKYTEKYN KINIELPAAV LDKISHCEWY 
GNIRQLNHFI ERCVVLCDDG NDLPEIILMM LEEEFSTRPT LHAREEEEQD NDTINVRIRS 
LEEMNAEIVH RVKAKTKISN GELALMMGIS RPTLLKMLKS GR