| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_3622 |
|---|
| Symbol | |
|---|
| ID | 7260640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 3846828 |
|---|
| End bp | 3847946 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643563544 |
|---|
| Product | queuine tRNA-ribosyltransferase |
|---|
| Protein accession | YP_002460075 |
|---|
| Protein GI | 219669640 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
|---|
| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00110996 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCAGTTC GTATAGAAGT TCTCAAAGAA GATAACCGTA CCCGTGCCCG CCTCGGCAAG
CTCCACACTC CTCACGGAGT GATCGAAACT CCCGTCTTTA TGCCCGTGGG AACCCAGGCT
ACGGTAAAAA CTATGACCCC TGAGGAATTA AAGGACCTGG GAGCGGGCAT AATATTAAGC
AATACCTATC ACCTTTTTTT GCGCCCGGGT CATGAGCTCA TCCGTGAAGC AGGCGGCCTT
CATGCTTTTA TGCATTGGGA TGGAGCAATT CTCACCGATA GCGGCGGCTT TCAAGTATTC
AGTCTCGGTG ACTTGCGCAA AATTACTGAG GAGGGAGTGG AATTCCGTTC CCATCTGGAT
GGTTCAAAGA AATTTTTAAG TCCGGAGATT GCTACACAAG TTCAGATGGC TTTAGGCTCC
GATATCGTCA TGGCTTTTGA TGAATGCACA CCTTATCCCG CCACCCGGGA CTATGCCAAA
GCTTCTTTGG AGCGTACGAC CCGTTGGCTT AAGCGTTGCC AGGAGACCTT GACCACCACA
GACCGGCAGG CTCTTTTTGG GATTGTTCAA GGAAGCATGT ATGAGGATCT GCGCAAGCAA
AGTGCGGCGG AAATCACTGA ATTGGATTTG CCGGGCTATG CCGTAGGTGG CCTGAGTGTG
GGAGAGCCTA AGGAACTGAT GTATGAAGTT CTGGATTATA CAGTTCCTCT ATTACCTAAG
GATAAGCCCC GATATTTGAT GGGAGTAGGT TCACCGGATG CCCTGATTGA AGGAGTGATG
AGGGGGATTG ATATGTTTGA CTGCGTTCTG CCGACGCGAA TTGCCCGTAA CGGAACCGCA
CTTACCCGTT ATGGCAAGCT TGTGGTCAGA AACGCTGAAT CAGCTCATGA TTTCTCACCT
ATCGATCCCA CCTGTGATTG CTACACCTGT AAAAATTACT CCCGGGCTTA CCTAAGGCAT
CTAATCAAAG CGGATGAAAT CCTGGGTTTG CGCCTGATGA CCATTCATAA CCTGCGTTTC
TTAACCAATC TTATGAGCGA GATTCGGGCG GCCATTAAAG AAAACCGCCT GCCCGAATAC
CGAGAGAAGT TTTTCTATGA GTATGGATAT TTGAAATAA
|
|---|
| Protein sequence | MAVRIEVLKE DNRTRARLGK LHTPHGVIET PVFMPVGTQA TVKTMTPEEL KDLGAGIILS
NTYHLFLRPG HELIREAGGL HAFMHWDGAI LTDSGGFQVF SLGDLRKITE EGVEFRSHLD
GSKKFLSPEI ATQVQMALGS DIVMAFDECT PYPATRDYAK ASLERTTRWL KRCQETLTTT
DRQALFGIVQ GSMYEDLRKQ SAAEITELDL PGYAVGGLSV GEPKELMYEV LDYTVPLLPK
DKPRYLMGVG SPDALIEGVM RGIDMFDCVL PTRIARNGTA LTRYGKLVVR NAESAHDFSP
IDPTCDCYTC KNYSRAYLRH LIKADEILGL RLMTIHNLRF LTNLMSEIRA AIKENRLPEY
REKFFYEYGY LK
|
|---|
| |